Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0852 ATGAGAGGTGGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTGGAAGACAACCCTGCACTGGCGGCAGGAGTAAGAGCTGGAGCCGTGGTTGCAGTTTTCATCTGGGCACCCGAAGAAGAAGGCCAATACTACCCCGGCAGAGTCTCCAGGTGGTGGCTCAAACAAAGCTTGGTTCATCTTGATTCTTCTCTCAGGAATCTTGGCACTCCTCTTGTCACTAAGCGATCCACTGATACTGTTTCTTCTCTCCTCGAGGTTGTTAAATCCACTGGAGCCACTCAACTCTTTTTTAATCATTTATATGATCCCCTGTCGCTTGTAAGGGATCACCGAGCAAAAGAGGTTCTGAATGCTCAGGGCATAACAGTACGTTCCTTCAACGCGGATTTACTGTATGAACCGTGGGATGTGAATGATGTCCATGGTCGACCGTTCACAACTTTTGCCGCTTTTTGGGACAGATGTCTTAGCATGCCTTATGACCCAGACTCACCTCTTCTTCCTCCTAAAAGGATTATTCCAGGTGATGTGTCGAGATGCCCCAGTGACACATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTAGAGCATGGTCACCGGGGTGGAGCAATGCTAACAAGGCATTGACAGCATTCATAAATGGTCCACTGATAGAGTACTCAATAAATTGCAGGAAGGCTGACAGTGCCACTACCTCACTTCTCTCACCCCATTTGCATTTTGGTGAGCTGAGTGTGAAGAAGGTCTTCCATCTTGTCCGCATCAAACAACTTCTGTGGGCCAACGAAGGAAACAAGGCCAGTGAAGAGAGTGTGAACTTGTTCCTTAAATCTATTGGTCTCAGAGAATATTCGAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTAAATGAGGGTTATTTTAAGGTATGGAGACAAGGAAGAACTGGGTATCCTTTGGTGGATGCAGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGACACACTTTTGGATGCCGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGCACACTCCCTGATGGTCGTCAATTTGACCGAATAGATCATCCACAGTTTGAGGGCTATAAATTCGACCCAAATGGAGAATATGTGCGACGCTGGCTTCCAGAACTTGCAAGGTTACCTACTGAGTGGATTCATCATCCTTGGAATGCACCAGAATCAGTGCTCCAAGCTGCTGGAATTGAACTAGGAACCAACTACCCTCTTCCTATTGTGGGAATAGATGCAGCAAAAACTAGACTACAAGAGGCACTATCAGAAATGTGGCAACTAGAGGCTGCTTCTAGAGCTGCAATGGAAAACGGAACTGAGGAAGGACTTGGAGACTCCTCTGAATCAATTCCTGCTGCGTTTCCTCAAGACACGCAAATGGAGGAGACTCATGAACCTGTTATGAACAATCACGTTCCTGTTGGTAGGCGTTACCTGGATCAGATGGTTCCAAGCATCACTTCCACCCTTCTGAGAGTAGAAGAGGAAGAAACTACTTCTGATCTTCGAAACTCAGAGGAAGAGAGCAGCAGAGCTGAAGTGCCAATAAATGTAGACGCACAACAGAATGCAGGAGTTACATTGAACGAACGGATCTTGCAGACTGCTCACAGGAATACACAAGTACAAAACAATACTACAATGGAGCCGAGAAACGTAGCTGAAGATTCTAGCATAGAATCTTCAAGTGGTACCAGGAGAGAACGGGATGGAGGTGTAGTTCCAGTATGGTCTCCCCCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATTACAAGTGGTTCCTCCTACTTGCAAAGGCATCCTCAGTCTCACCAATTACTGAATTGTAGGCAGCTACCTCAGACCGGGTAA 2049 0.4651 MRGGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLVHLDSSLRNLGTPLVTKRSTDTVSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLNAQGITVRSFNADLLYEPWDVNDVHGRPFTTFAAFWDRCLSMPYDPDSPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNANKALTAFINGPLIEYSINCRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQLLWANEGNKASEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRQFDRIDHPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGTNYPLPIVGIDAAKTRLQEALSEMWQLEAASRAAMENGTEEGLGDSSESIPAAFPQDTQMEETHEPVMNNHVPVGRRYLDQMVPSITSTLLRVEEEETTSDLRNSEEESSRAEVPINVDAQQNAGVTLNERILQTAHRNTQVQNNTTMEPRNVAEDSSIESSSGTRRERDGGVVPVWSPPASSYSEQFVGDENGITSGSSYLQRHPQSHQLLNCRQLPQTG* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0852 682 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 7 483 IPR014134 GO:0009785|GO:0009882
Vra5g0852 682 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Vra5g0852 682 PANTHER CRYPTOCHROME-1 5 598 - -
Vra5g0852 682 Pfam FAD binding domain of DNA photolyase 284 482 IPR005101 -
Vra5g0852 682 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 179 IPR036155 -
Vra5g0852 682 MobiDBLite consensus disorder prediction 597 621 - -
Vra5g0852 682 Pfam DNA photolyase 8 163 IPR006050 -
Vra5g0852 682 Gene3D HUPs 9 207 IPR014729 -
Vra5g0852 682 MobiDBLite consensus disorder prediction 641 682 - -
Vra5g0852 682 PANTHER CRYPTOCHROME 5 598 IPR002081 -
Vra5g0852 682 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 195 489 IPR036134 -
Vra5g0852 682 MobiDBLite consensus disorder prediction 597 682 - -
Vra5g0852 682 Pfam Blue/Ultraviolet sensing protein C terminal 512 627 IPR020978 -
Vra5g0852 682 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Vra5g0852 682 PRINTS DNA photolyase signature 333 349 IPR002081 -
Vra5g0852 682 PRINTS DNA photolyase signature 353 371 IPR002081 -
Vra5g0852 682 PRINTS DNA photolyase signature 392 406 IPR002081 -
Vra5g0852 682 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Vra5g0852 682 MobiDBLite consensus disorder prediction 555 574 - -
Vra5g0852 682 Gene3D - 135 294 - -
Vra5g0852 682 Coils Coil 471 491 - -
Vra5g0852 682 MobiDBLite consensus disorder prediction 550 583 - -
Vra5g0852 682 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0852 Vra-Chr5 14366670 14371653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0852 K12118 - gmx:100797839 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0852 5 14366670 14371653 Vra5g0852 5 14366670 14371653 ECH