Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0848 ATGACAATGCAGGCAGGGGACCTCTGCCACCAACAAAATACGCATTCTTCCCTCACTTTCTTCTCTTCAATTTCAGATTTTGCTTCCTTCACCGGAGGCTTGTTTCTCGAGCCCAAAGTTCCCGATTCCTTTCTTCGTTCCGTTTCCGTCAAGATTCACGCCGCCGCTTCTTCCCAATCCAACACTCATCGCCAACGGAGGAGGCTTCCGGTCGGCTGTTTTTTGTCAGTGAGCTTGCCGACTGTAAAGCTCGTCACTGAACCCAAACTGCCAAATGATGAACACGTGTCCAACCAGGACACCACCTCCAACGGCGTCGTTCAGCAAAGAAAGGTTAAGGTTAAGGTGCGAGGAGGCAATGCCGTCAACACCACCAAGCATCTCTGGGCTGGTGCTATTGCCGCTATGGTGTCTAGGACTTGTGTTGCTCCACTTGAAAGACTGAAGTTGGAATACATAGTTCGTGGTGAGAAGAGGAATATATTCGAGCTTATTAGCAAAATTGCCGCTACTCAAGGGTTGAGAGGCTTTTGGAAAGGGAACCTTGTAAATGTTCTGCGAACAGCTCCATTCAAAGCGGTTAATTTCTGTGCCTACGATACTTATAGAAAGCAGTTGCTGAGGTTTTCTGGGAATGAGGAAACTACTAATTTTGAGAGGTTTATTGCTGGTGCTGCTGCTGGGATTACTGCTACCATTATTTGCCTTCCACTTGACACGATCCGAACCAAGTTGGTGGCACCTGGTGGAGAAGCTTTGGGTGGTGTAATTGGTGCTTTCCAATACATGATTCGAACCGAAGGATTCTTTTCTCTTTACAAGGGTTTAGTACCATCAATTATAAGTATGGCTCCTTCTGGTGCAGTTTTTTATGGTGTATATGATATACTCAAATCAGCTTATCTGCATTCGCCGGAAGGAAAGAAGAGAATTCAGAATATGCATAAAGAGGGTCAGGAATTGAGTGCATTTGATCAGCTTGAGTTGGGTCCAGTAAGAACATTGTTGAATGGGGCTATTGCTGGTGCATGTGCAGAAGCTGCTACGTACCCATTTGAAGTGGTGAGGAGGCGACTTCAATTGCAAGTTCAGGCTACTAAATTAAGTTCTTTTGCAACGTTTGTGAAAATAGTTGAACAGGGAGGCATTCCAGCTCTCTATGCAGGACTTGTTCCCAGCTTATTGCAGGTACTTCCTTCAGCTTCAATAAGTTTCTTTGTCTATGAGTTCATGAAGATTGTTCTGAAAGTGGAGTAG 1257 0.4527 MTMQAGDLCHQQNTHSSLTFFSSISDFASFTGGLFLEPKVPDSFLRSVSVKIHAAASSQSNTHRQRRRLPVGCFLSVSLPTVKLVTEPKLPNDEHVSNQDTTSNGVVQQRKVKVKVRGGNAVNTTKHLWAGAIAAMVSRTCVAPLERLKLEYIVRGEKRNIFELISKIAATQGLRGFWKGNLVNVLRTAPFKAVNFCAYDTYRKQLLRFSGNEETTNFERFIAGAAAGITATIICLPLDTIRTKLVAPGGEALGGVIGAFQYMIRTEGFFSLYKGLVPSIISMAPSGAVFYGVYDILKSAYLHSPEGKKRIQNMHKEGQELSAFDQLELGPVRTLLNGAIAGACAEAATYPFEVVRRRLQLQVQATKLSSFATFVKIVEQGGIPALYAGLVPSLLQVLPSASISFFVYEFMKIVLKVE* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0848 418 PRINTS Mitochondrial carrier protein signature 127 140 IPR002067 GO:0055085
Vra5g0848 418 PRINTS Mitochondrial carrier protein signature 140 154 IPR002067 GO:0055085
Vra5g0848 418 PRINTS Mitochondrial carrier protein signature 180 200 IPR002067 GO:0055085
Vra5g0848 418 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Vra5g0848 418 PRINTS Mitochondrial carrier protein signature 273 291 IPR002067 GO:0055085
Vra5g0848 418 PRINTS Mitochondrial carrier protein signature 338 360 IPR002067 GO:0055085
Vra5g0848 418 ProSiteProfiles Solute carrier (Solcar) repeat profile. 329 414 IPR018108 -
Vra5g0848 418 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 205 IPR018108 -
Vra5g0848 418 PANTHER SOLUTE CARRIER FAMILY 25 25 418 - -
Vra5g0848 418 Pfam Mitochondrial carrier protein 215 302 IPR018108 -
Vra5g0848 418 Pfam Mitochondrial carrier protein 122 207 IPR018108 -
Vra5g0848 418 Pfam Mitochondrial carrier protein 329 415 IPR018108 -
Vra5g0848 418 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 25 418 - -
Vra5g0848 418 Gene3D Mitochondrial carrier domain 118 417 IPR023395 -
Vra5g0848 418 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 300 IPR018108 -
Vra5g0848 418 SUPERFAMILY Mitochondrial carrier 120 411 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0848 Vra-Chr5 14313913 14319456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0848 32 397 Organic Solute Cotransporters AT5G64970 65.617 7.06e-167 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0848 - - gmx:100816623 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0848 5 14313913 14319456 Vra5g0848 5 14313913 14319456 ECH