Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0845 ATGGCGGGTGGGGTGGTTCCTGTGGATTCGTCACCAATTACCAATGGCTTCGTTGCCAAGATCACGCTCTCAATCGTCATCACCTGCATCGTTGCTGCATCCAGTGGACTCCTTTTTGGATATGACCTCGGAGTTTCAGGAGGAGTGACAACAATGGTACCGTTTCTGGAAAAATTCTTCCCAGACATATTAAGAAAGATTGGTGGGAGTGAAGTGAACATGTACTGTGTTTATGACAGTCAAGTGTTGACATTGTTCACATCTTCTCTGTATCTTGCGGGGTTAGTATCATCTCTGGTAGCTAGTCGAGTAACAACAGCAATAGGTAGAAGAAACACCATCTTATTAGGTGGTGTAGTCTTTCTTCTTGGTGGTTCCCTTAATGCAGGTGCAGAGAATATTGTAATGCTCATTCTTGGTCGTGTCTTACTTGGATTTGGAGTCGGTTTCACTAATCAAGCAGCACCTTTGTACCTTTCTGAAATTGCTCCACCGAAATGGAGAGGAGCATTCAACACAGGCTTCCAATTCTTTTTAGGAGTTGGAACATTGGTCGCTGGCTGCATAAACTATGCAACTGCGAAGCACACGTGGGGGTGGCGAGTTTCGCTTGGCATCGCTGTGGTGCCTGCAGCGGTTATGACAATCGGTGCCTTGCTTATAACTGACACTCCCAGTAGCTTGGTTGAACGTGGCAAAATAGAAGAAGCCAGAAGAGCCTTGCGGAAGGCCAGAGGATCCTCCTTTGATGTTGAACCTGAATTGGACGAACTCATTAAGTGGTCACAGATTGCAAAATCTGTAGACAAGGAGCCCTTTAAAACCATATTTGAGAGGAAATATCGACCCCATTTGGTCATGGCAATTGCTATACCGTTTTTTCAGCAAATGACAGGGATTAACATCGTGGCATTCTATGCTCCTAACCTGTTTCAATCAGTGGGTTTGGGACATGATGCAGCTTTACTTTCTGCCATTATACTCGGAGCAGTCAACCTTGCCTCTCTCCTCGTCTCAACTGCTGTTGTTGATCGCTTTGGTCGAAGGTTCTTGTTCATATCTGGTGGCATTCTCATGCTTGTTTGTCAGATTGCGGTGTCAGTTATGCTGGCAGTGGTAACTGGTGTTCATGGTACAAAGGACTTATCAAAAGGCAACGCAATTGGAGTGTTGGTGCTGCTTTGCTTCTACACTGCTGGTTTTGGGTGGTCATGGGGACCTCTCACGTGGCTAATTCCGAGTGAGATTTTTCCGTTAAAAATCAGAACCACTGGACAAAGCATAGCTGTCGCGGTGCAGTTTATTACCATATTTGTATTGTCCCAGACATTCTTGACAATGCTGTGCCACTTTAAGTTCGCTTCCTTCGTGTTCTATGCGGGTTGGATTATAGTTATGACAATCTTTGTTATACTTTTCGTGCCAGAAACAAAGGGAATTCCGTTGGAATCTATGTACACCATATGGGGAAAACACTGGTTCTGGCGCCGGTTTGTAAAGGAAGTTACTCAGCAAAATCTTCCATGA 1527 0.4506 MAGGVVPVDSSPITNGFVAKITLSIVITCIVAASSGLLFGYDLGVSGGVTTMVPFLEKFFPDILRKIGGSEVNMYCVYDSQVLTLFTSSLYLAGLVSSLVASRVTTAIGRRNTILLGGVVFLLGGSLNAGAENIVMLILGRVLLGFGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFLGVGTLVAGCINYATAKHTWGWRVSLGIAVVPAAVMTIGALLITDTPSSLVERGKIEEARRALRKARGSSFDVEPELDELIKWSQIAKSVDKEPFKTIFERKYRPHLVMAIAIPFFQQMTGINIVAFYAPNLFQSVGLGHDAALLSAIILGAVNLASLLVSTAVVDRFGRRFLFISGGILMLVCQIAVSVMLAVVTGVHGTKDLSKGNAIGVLVLLCFYTAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVAVQFITIFVLSQTFLTMLCHFKFASFVFYAGWIIVMTIFVILFVPETKGIPLESMYTIWGKHWFWRRFVKEVTQQNLP* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0845 508 ProSitePatterns Sugar transport proteins signature 2. 143 168 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra5g0845 508 PRINTS Sugar transporter signature 36 46 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0845 508 PRINTS Sugar transporter signature 138 157 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0845 508 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0845 508 PRINTS Sugar transporter signature 391 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0845 508 PRINTS Sugar transporter signature 414 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0845 508 TIGRFAM SP: MFS transporter, sugar porter (SP) family 25 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0845 508 SUPERFAMILY MFS general substrate transporter 31 484 IPR036259 -
Vra5g0845 508 Pfam Sugar (and other) transporter 29 489 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra5g0845 508 CDD MFS_STP 31 476 IPR044778 GO:0015145|GO:0015749
Vra5g0845 508 Gene3D MFS general substrate transporter like domains 18 492 IPR036259 -
Vra5g0845 508 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 478 IPR020846 GO:0022857
Vra5g0845 508 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 3 502 IPR045262 GO:0015144
Vra5g0845 508 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 3 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0845 Vra-Chr5 14273540 14278458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0845 52 503 Organic Solute Cotransporters AT1G34580 63.516 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0845 K24193 - gmx:100817162 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0845 5 14273540 14278458 Vra5g0845 5 14273540 14278458 ECH