Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0831 ATGCATCCTTTCTGCTGCGTGTCCGCCATTTCCGACCAGGCATCGCCAGTGAAACCCTCGTTCGCCGACTTCCCTATGCCGCCTCTCCCCGCCGCCGCCGCCGCCGTGAGATCCGATTCGGCTCCGCGGCACAGCCACAAGCACAGCCACAGCGGCAGTCAGCGGGAGCAGCCCGTGGACGTGAAGATCAACGACCTCGTTGGCAACGGAATCTCCGGAATACTGTACAAATGGGTGAATTACGGCAAAGGATGGCGACCTCGATGGTTTGTACTCCAAGACGGTGTTCTCTCCTACTATAAGATTCACGGACCTGATAAGATCGTCGTGAATCCCGAAACCGAGAAAGGCTCCATGGTTATCGGCGAAGAATCCATGCGCAGGATCACTCGCAACCGCAATTCCTATCCCTGCCAGCACGTGCGAAAGCCGTTTGGGGAAATCCATCTCAAGGTTTCGACCATTCGCGAGAGCAAATCGGATGACAAGCGCTTCTCGGTCTTCACCGGAACGAAGAGGCTCCACCTGAGGGCGGATACGCATGAAGATCGCGTGTCGTGGACGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCGCGGATGTCGAACAGCGAGTTGATGGCTCCGTTGGACAATGTAACTGTTTCGACTGAGAAACTGAGACTTCGGCTAATGGAAGAGGGAGTGAGCGAGGGGACTATTCAGGACAGTGAGCAAATTATGAGGACTGAGTTTGCGGCGATGCAAAGCCAGCTTGTGCTGCTTAAGCAGAAGCACTCAATTCTCATTGACACTCTGCGCCAATTGGAGACAGAAAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATGAAGAGGCTTCCTCAAGATTAGCGCAAGAAAAATTTAGTGAAGGAACCGGAAGTGAATCTGAAGATGACAATGATCGAAATGATGCTGCTGAGGAAGAAACTGACGATGATGACAATGCCTTTTTTGATACTCGTGATATTCTGTCGTCCAGTTCTTTTAAAAGTAATGGGTCTGATTATAGAATGTCATCCTTCTCTTCAGATGATGAAGGGTTCTATGCATTTGAATCAGAGGATGACATAGATCCTTCGATTAGATATGTTGGAACCAATTACCCTCATGTTAAGCGGCGTAAGAAATTGCCAGACCCTGTAGAAAAAGAGAAAGGAGTCAGTCTGTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAACGAGCCTCTTTCCTCCCTACAAAAGTGTTTTGAGGAAATGGAGTACTCGTATCTCTTGGACCAAGCATATGAATGGGGAAGAAGGGGTAATAGCCTCATGAGGATTCTCTATGTTGCGGCTTTTGCTGTATCTGGCTATGCTGCAACAGAAGGAAGAGTTTGCAAACCATTTAATCCATTACTTGGGGAAACGTATGAGGCTCACTATCCGGATAAAGGCCTTCGGTTTTTCTCGGAGAAGGTCAGTCATCACCCTATGATTGTAGCATGTCACTGTGAGGGTACGGGTTGGAAATTTTGGGGAGATAGCAACCTAAAGAGCAAATTTTGGGGGCGCTCTATTCAGCTTGACCCTGTTGGTATTTTGACTTTGGAATTTGATGATGGGGAAGTTTTCCAGTGGAGTAAGGTTACTACATCAATATACAATCTCATATTGGGAAAACTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGCAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATCATTCAAGATAGGAATGGAAAAACTGTATCAACTTTGTTTGGAAAATGGGATGAAAGCATGTATTACGTTAATGGAGACTACACCGGGAAAGGGAAAGGTCATGAATCTTTGTCAGATGCCCGTTTGCTCTGGAAGCGAAGCAAGGCTCCCAAGATTCCCACTAGATACAACTTCACTCGCTTTGCCATCACACTAAACGAACTGACCCCTGGTTTGAAGGAGAAGTTGCCCCCTACAGATTCAAGGTTAAGGCCAGACCAAAGGTATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTACGGCTAGAGCAGCGGCAGCGCCAGGCTCGGAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGCGAAGGATAAGGCGAGCGGGACATACCGTTACGTAGGTGGATACTGGGAGGCCCGACAAAGGGGAAACTGGGACTCCTGCCCTGACATCTTTGGCCAAATTCCTTCTTCCGATCATATTTCTGACGAAGTTCGCTGTCATGTGCACCCATGA 2364 0.475 MHPFCCVSAISDQASPVKPSFADFPMPPLPAAAAAVRSDSAPRHSHKHSHSGSQREQPVDVKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNPETEKGSMVIGEESMRRITRNRNSYPCQHVRKPFGEIHLKVSTIRESKSDDKRFSVFTGTKRLHLRADTHEDRVSWTEALQAVKDMFPRMSNSELMAPLDNVTVSTEKLRLRLMEEGVSEGTIQDSEQIMRTEFAAMQSQLVLLKQKHSILIDTLRQLETEKVDLENTVVDESQRQWNDEEASSRLAQEKFSEGTGSESEDDNDRNDAAEEETDDDDNAFFDTRDILSSSSFKSNGSDYRMSSFSSDDEGFYAFESEDDIDPSIRYVGTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRRGNSLMRILYVAAFAVSGYAATEGRVCKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRNPHQVHGIIQDRNGKTVSTLFGKWDESMYYVNGDYTGKGKGHESLSDARLLWKRSKAPKIPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYDMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYVGGYWEARQRGNWDSCPDIFGQIPSSDHISDEVRCHVHP* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0831 787 Pfam Pleckstrin homology domain 76 192 - -
Vra5g0831 787 Pfam Oxysterol-binding protein 402 756 IPR000648 GO:0008289
Vra5g0831 787 SUPERFAMILY PH domain-like 71 202 - -
Vra5g0831 787 Gene3D - 69 198 IPR011993 -
Vra5g0831 787 MobiDBLite consensus disorder prediction 35 60 - -
Vra5g0831 787 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 775 - -
Vra5g0831 787 SMART PH_update 69 198 IPR001849 -
Vra5g0831 787 ProSiteProfiles PH domain profile. 68 196 IPR001849 -
Vra5g0831 787 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 775 IPR000648 GO:0008289
Vra5g0831 787 MobiDBLite consensus disorder prediction 314 330 - -
Vra5g0831 787 SUPERFAMILY Oxysterol-binding protein-like 397 773 IPR037239 -
Vra5g0831 787 MobiDBLite consensus disorder prediction 40 55 - -
Vra5g0831 787 Coils Coil 259 286 - -
Vra5g0831 787 CDD PH_ORP_plant 71 203 - -
Vra5g0831 787 Gene3D - 488 668 - -
Vra5g0831 787 MobiDBLite consensus disorder prediction 285 331 - -
Vra5g0831 787 Gene3D - 699 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0831 Vra-Chr5 14056899 14063284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0831 K20456 - gmx:100137077 1468.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0831 5 14056899 14063284 Vra5g0831 5 14056899 14063284 ECH