Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0826 ATGCACAATGGATTTGCAATGGATTTGAACCAAATCCAGTTAGCTTTACGCTGTTGTGGGCAGCTTCAAGCTATCAAACATGCTAAATCACTTCATTCCCATATAATAAAACTTGGCCTTTTCAATCACGTTTTTCTCCTAAACAACATGATCTCTGTCTACGCAAAATGCTCCCATTTTGACGATGCACGAACCCTTTTCGACGATATGCCTCACAGGAACATAATTTCTTACACAACAATGGTCTCTGCACTCACCAATTCCGGGAGACCCCAAGATGCTCTCACACTCTATAACCACATGCTGGAATCTAAAACAGTGCAACCCAATCAGTTCTTGTACTCAGCGGTTCTCAAGGCATGTGGAGTCGCCGGTGATGTTGAATGGGGCAAGTTGGTTCACCGACGAGTATATCGGGCAAGGTTAGAGTGTGACACTGTTCTGATGAATGCCCTCTTGGACATGTACGTCAAATGTAGAAGCTTGGCTGATGCAAAACGAGTTTTCTACGACATGCCGAGTAAAAATTCTACTTCATGGAACACCCTCATTCTCGGGTATGCCAAGCAGGGTTTTGTGAAGGATGCGTTGGATCTGTTTGATCAAATGCCAGAACCAGACATTGTGTCTTGGAACAGCATCATTGCCGGTCTTGCAGATACTTCTAGCTTCCATGCATTACAGTTTGTTTCTATGATGCACAGGAAGGGCCTTAAACTTGATGCATTCACATTTCCATGTGCCCTCAAAGCGTGTAGTCTGCTTGGCAAGTTAACTGTAGGGAGACAGATTCATTGTTGTATTATCAAGTCAGGGTTTGAGTGTAGCTATTACTGTACATCAGCATTGATTGATATGTATTCGAATTGCAAGCTATTGGATGAAGCAATGAATATATTTCATAAGAACTCTCCTCTTGCAGAAAGCTTGGCAGTGTGGAATTCCATGCTTTCAGGGTTTGTTGCCAATGGAGATTGGTGGAAGGCTCTCAGTATGATTGCTCATATGCATCATTCTGGTGCACAGTTTGATCCCTATACCTTTAGTGTTGCTTTAAAGGTCTGCATCCAGTTTGAAAACTTGAGGTTGACATCTCAAGTGCATGGATTGGTCATCACTAGTGGCTATGAGTTAGACTATGTTATTGGAAGCATTTTTATTGATCTATATGTAAAACAAGGCAATATTAACAATGCATTAAGATTGTTTGAAAGGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGTTGTGCTAGATTTGGTCTAGATACAATGGCTCTTTCCCTCTTCATGGATATGGTTCATCTGGATCTTGAGATTGATCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTTCAAGTTTGGCATTGCTTCCAAGTGGCAAGCAAATTCATTCTTTTTGTCTTAGGAAGGGATATGAATCAGAGCGAGTTATTACAACTGCTCTTACTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAACTTTATTTAATTGTCTTTCCGAAGTAGATACCTTAAGTTGGACGGGGATTATTGTGGGATGTGCACAAAATGGAAGAGCAGACAAGGCAATCAGTCTTCTGCATAAGATGATTGAATCGGGTACAAAGCCAAATGAAATCACCATTATAGGTGTTCTTTCTGCATGTAGACATGCAGGCCTAGTAGAAGAGGCATGGACTATATTTAAGTCTATTGAAACAAAGCATGGATTGACACCATGCCCTGAACATTACAATTGTATGGTTGATATATTTGCTCAAACTGGACGTTTTAAAGAAGCAATAAACTTGATTGATGACATGCCGTTTAAGCCTGACAAAACCATATGGTGTTCCTTGCTTGGTGCCTGTGGAACTTACAAGAATCGACATCTTGCAAAAATTGTTGCTGAGCATCTTCTTGCTACCTCACCCGAAGATGCTTCTGTGTATATAATGCTATCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAGAGTACGAGAAGCTGTCCGAAAAGTAGGTATAAAAGGGGCTGGAAAAAGCTGGATCGAGATCTTTAGTTGA 2079 0.406 MHNGFAMDLNQIQLALRCCGQLQAIKHAKSLHSHIIKLGLFNHVFLLNNMISVYAKCSHFDDARTLFDDMPHRNIISYTTMVSALTNSGRPQDALTLYNHMLESKTVQPNQFLYSAVLKACGVAGDVEWGKLVHRRVYRARLECDTVLMNALLDMYVKCRSLADAKRVFYDMPSKNSTSWNTLILGYAKQGFVKDALDLFDQMPEPDIVSWNSIIAGLADTSSFHALQFVSMMHRKGLKLDAFTFPCALKACSLLGKLTVGRQIHCCIIKSGFECSYYCTSALIDMYSNCKLLDEAMNIFHKNSPLAESLAVWNSMLSGFVANGDWWKALSMIAHMHHSGAQFDPYTFSVALKVCIQFENLRLTSQVHGLVITSGYELDYVIGSIFIDLYVKQGNINNALRLFERLPDKDVVAWSSLIVGCARFGLDTMALSLFMDMVHLDLEIDHFVLSIVLKVSSSLALLPSGKQIHSFCLRKGYESERVITTALTDMYAKCGEIEDALTLFNCLSEVDTLSWTGIIVGCAQNGRADKAISLLHKMIESGTKPNEITIIGVLSACRHAGLVEEAWTIFKSIETKHGLTPCPEHYNCMVDIFAQTGRFKEAINLIDDMPFKPDKTIWCSLLGACGTYKNRHLAKIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSRVREAVRKVGIKGAGKSWIEIFS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0826 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Vra5g0826 692 Gene3D Tetratricopeptide repeat domain 489 691 IPR011990 GO:0005515
Vra5g0826 692 Gene3D Tetratricopeptide repeat domain 224 363 IPR011990 GO:0005515
Vra5g0826 692 Gene3D Tetratricopeptide repeat domain 1 133 IPR011990 GO:0005515
Vra5g0826 692 Pfam PPR repeat 385 410 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 514 542 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 412 439 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 281 302 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 148 176 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 485 507 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 585 609 IPR002885 -
Vra5g0826 692 Pfam PPR repeat 179 205 IPR002885 -
Vra5g0826 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Vra5g0826 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Vra5g0826 692 SUPERFAMILY TPR-like 42 667 IPR011990 GO:0005515
Vra5g0826 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vra5g0826 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 90 687 - -
Vra5g0826 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 128 - -
Vra5g0826 692 TIGRFAM PPR: pentatricopeptide repeat domain 179 204 IPR002885 -
Vra5g0826 692 TIGRFAM PPR: pentatricopeptide repeat domain 76 107 IPR002885 -
Vra5g0826 692 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Vra5g0826 692 TIGRFAM PPR: pentatricopeptide repeat domain 312 340 IPR002885 -
Vra5g0826 692 TIGRFAM PPR: pentatricopeptide repeat domain 48 75 IPR002885 -
Vra5g0826 692 TIGRFAM PPR: pentatricopeptide repeat domain 586 609 IPR002885 -
Vra5g0826 692 Pfam PPR repeat family 74 121 IPR002885 -
Vra5g0826 692 Pfam PPR repeat family 312 355 IPR002885 -
Vra5g0826 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Vra5g0826 692 PANTHER BNAC03G28070D PROTEIN 90 687 - -
Vra5g0826 692 PANTHER BNAC03G28070D PROTEIN 15 128 - -
Vra5g0826 692 Pfam E motif 628 689 IPR046848 -
Vra5g0826 692 Gene3D Tetratricopeptide repeat domain 134 223 IPR011990 GO:0005515
Vra5g0826 692 Gene3D Tetratricopeptide repeat domain 364 468 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0826 Vra-Chr5 13998522 14003571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0826 7 690 Glycoside Hydrolase AT3G49170 29.065 4.04e-105 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0826 - - gmx:100780678 1207.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0826 5 13998522 14003571 Vra5g0826 5 13998522 14003571 ECH