Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0823 ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACCTAGAAATGGAGAGGGAAGAAGAAGGTTCTAAGTCTACAACTGGAAAACTATCTAGGCTCTTTTGGCATGGTGGCTCTGTCTATGATGCATGGTTTAGTTGTGCTTCTAATCAGGTTGCACAAGTACTATTGACACTACCATATTCCTTTTCACAACTGGGGATGGTATCTGGAATCATATTTCAGCTTTTCTATGGACTCATGGGAAGCTGGACTGCTTACCTTATCAGTGTCCTTTATGTTGAGTACCGAACCAGAAAAGAGAGAGAAAAAGTTGATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTCGATGGACTTCTGGGAAAACACTGGAGAAATCTTGGTCTTTTTTTTAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGCAACATATACTACATAAATGACAATCTGGACAAGAGAACTTGGACTTACATCTTTGGCGCATGCTGTGCAACAACGGTGTTCATCCCTTCTTTCCACAATTACAGAATCTGGTCATTCTTAGGGCTCATGATGACCACTTATACTGCATGGTATATGACCATAGCTTCACTTACCAATGGCCAGGTCGAGGGCGTGACGCACTCTGGGCCAACCAAATTGGTTCTTTACTTCACTGGGGCTACCAACATTCTCTATACTTTCGGTGGACATGCTGTTACAGTGGAAATTATGCATGCAATGTGGAAGCCACAGAAGTTTAAGATGATATATCTGATCGCAACCCTATATGTGTTGACCCTAACTTTGCCATCAGCAGCTGCAGTTTACTGGGCATTTGGGGATCAGCTTCTTACCCATTCTAATGCCCTCTCATTGCTCCCAAAGACAGGCTTCAGAGACACTGCTGTCATCCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTTTATACTTTGTGTGGGAGAAATTCATTGGGGTGCATGAGACCAAGAGTTTGTTCAAAAGGGCGTTGGCTAGACTTCCTGTAGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTTCTTGTCAGCTTCACTGTTTACATTATTCCTGCCTTGGCTCACATGATGACCTTTGCTTCGGCACCAGCTAGGGAGAATGCTGTGGAGAGACCACCATCAAGGTTAGGAGGTTGGGTAGGATCGTACTCGATGAACGTGTTTGTGGTGGTGTGGGTTTTGGTGGTAGGATTTGGGTTGGGAGGATGGGCAAGCATGATTAACTTCATACACCAAATTGACACGTTTGGGCTATTTGCAAAGTGCTATCAGTGTCCCCCTCACAAGGCTTAA 1398 0.4349 MASEKVETVVAGNYLEMEREEEGSKSTTGKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIIFQLFYGLMGSWTAYLISVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLMMTTYTAWYMTIASLTNGQVEGVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKMIYLIATLYVLTLTLPSAAAVYWAFGDQLLTHSNALSLLPKTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMMTFASAPARENAVERPPSRLGGWVGSYSMNVFVVVWVLVVGFGLGGWASMINFIHQIDTFGLFAKCYQCPPHKA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0823 465 Pfam Transmembrane amino acid transporter protein 37 405 IPR013057 -
Vra5g0823 465 PANTHER OS05G0424000 PROTEIN-RELATED 3 460 - -
Vra5g0823 465 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 3 3 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0823 Vra-Chr5 13974164 13976804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0823 1 464 Organic Solute Cotransporters AT1G77690 88.273 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0823 K13946 - gmx:100815243 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0823 5 13974164 13976804 Vra5g0823 5 13974164 13976804 ECH