Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0820 ATGAAGGTGTGGACGTTAGACGCAGCATTGCAGCGGTGCCAATGGCCGAGGCACTTCAGAGAGATTCTCTCACAAACGATCCTCACCGGCCTCATCTCAGACCCCTACGCTGCAAGCAGAGTCATAAACTTCTCTACTCGCTCCGCTCTCGTTCCCTTCGACTATTCCCTCCGAATCTTCAACCATCTTCACAATCCCAACGCCTTCACATGGAACACCATCATGCGCGCCCACTTCGAACTCCGAAACAACCCCCACCAAGCCCTCACACTCTACAAGCTCTTCCTTGCGGAACACGCAAAACCCGATAACTACACCTACCCAATTCTCCTTCAATGCTGCGCTGCCCGGGTGTCCGAGTTCGAGGGAAGGGAGCTGCACGCACATGTCGTGAGGTTTGGTTTTCATCAAGATGTGTACGTCCGGAACACGCTGATCAACTTGTATGCTATATGTGGGAGCATGTCCAGTGCGCGCCAGGTGTTTGAGGAAAGTCCTGTGTGGGATTTGGTCTCTTGGAATACTGTTTTGGCGGGGTATGTTCAGGCGGGAAATGTGGAGGAGGCGGAACGTGTGTATAGGGGAATGCCGGAGAGGAACACCATTGCTTCGAATTCCATGATTGTGCTCTTTGGAAGGAAGGGGTGTGTGGAGAAGGCGCGGCGGATTTTTGATGAGGTTCGAGGGAGGGATATGGACATGGTGTCGTGGAGTGCGATGGTTTCTTGTTATGAGCAGAATGAGATGTGTGAGGAGGCGTTGGTTTTGTTTGTGGAGATGAAGGCGAGTGGGGTGACAGTGGATGAGATCGTTGTGGTTAGTGTTGTATCCGCGTGTTCGCGAATTTTGAATGCTGAGATGGGGAGGTTGGTGCATGGTTTGGCGGCGAAAGTTGGGGTTGAGGATTATGTTAGTCTTAAGAATGCTTTGATACATTTGTACTCTAGTTGTGGGGAGATAGTGGATGCGCAAAGAATTTTTGATGATGGTGGTGTTCTCTTGGATCAAATATCTTGGAACTCGATGATTTCTGGGTACTTGAGGTGTGGTTCAATTGAATCTGCTGAGAAGTTGTTTTATTCCATGCCGGAGAAGGACGTTGTGTCTTGGAGTGCCATGATATCTGGTTATGCTCAACATGAATGTTTTTCAGAGGCTTTGGCATTGTTCCAAGAAATGCAGCTTCATGGAGTCAAGCCCGACGAAACTGCTTTAGTTAGTGCCATCTCGGCTTGCACCCATCTGGCTGCTTTGGACATAGGGAAATGGATTCATGCTTATATAAATAAAAATAAATTACAGATTAATACTATTCTGAGCACGACTCTTATAGACATGTATGTGAAGTGCGGGTGTGTGGAAAATGCATTGGAGGTTTTCTACGCGATGCAGGAAAAGGGGGTTTCTACCTGGAATGCAATCATTCTTGGGTTGGCAATGAATGGTTTGGTAGAACAGTCACTCAGCATGTTTGCAGATATGAAAAAAACTAAGACACTTCCTAATGAGATAACATTTATGGGAGTTCTTGGGGCCTGTCGGCACATGGGCCTAGTCAATGAGGGGCGTCACTACTTTAGTTCCATGATCCACGAACACAAAATAGAGCCTAATATTAAGCACTACGGATGTATGGTTGATCTTTTTGGACGTGCAGGTTTGCTTAAAGAAGCGGAGGAACTGATTGAGAGTATGCCAATGGCACCTGATGTTGCCACTTGGGGTGCCTTGCTCGGGGCTTGTAGAAAACACCATGACAATGAAATGGGAGAGAGGGTGGGAAGAAAACTTATTCAGCTTCAGCCTAACCATGATGGTTTCCATGTATTATTGTCAAATATATATGCTTCAAAAGGACATTGGGGCAATGTTCTTGAAATTCGGGGAATTATGGCACAACATGGGGTGGTAAAGACACCTGGTTGTAGCATGATTGAAGCAAATGGGATAGTTCATGAATTTTTGGCTGGAGATAAGACCCACCCACAAATAAGTGATATTGAGCACATGTTAGATGAAGTGTCAGCAAAATTAAAGATTGAGGGCTATGTACCAACCACAAGTGAGGTTTCACTAGACATAGACGATGAAGAGAAGGAAACTGCACTTTTCAGGCACAGTGAGAAACTTGCAGTCGCCTTTGGACTTATCACTATAGCTCCACCAACTCCAATCAGAGTTATGAAGAACTTGCGCATTTGTAATGATTGCCACACTGTTGTAAAGTTAATCTCCAAAGCATTTGATCGTGAAATTGTGGTGCAGTACATTTGA 2274 0.4604 MKVWTLDAALQRCQWPRHFREILSQTILTGLISDPYAASRVINFSTRSALVPFDYSLRIFNHLHNPNAFTWNTIMRAHFELRNNPHQALTLYKLFLAEHAKPDNYTYPILLQCCAARVSEFEGRELHAHVVRFGFHQDVYVRNTLINLYAICGSMSSARQVFEESPVWDLVSWNTVLAGYVQAGNVEEAERVYRGMPERNTIASNSMIVLFGRKGCVEKARRIFDEVRGRDMDMVSWSAMVSCYEQNEMCEEALVLFVEMKASGVTVDEIVVVSVVSACSRILNAEMGRLVHGLAAKVGVEDYVSLKNALIHLYSSCGEIVDAQRIFDDGGVLLDQISWNSMISGYLRCGSIESAEKLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVKPDETALVSAISACTHLAALDIGKWIHAYINKNKLQINTILSTTLIDMYVKCGCVENALEVFYAMQEKGVSTWNAIILGLAMNGLVEQSLSMFADMKKTKTLPNEITFMGVLGACRHMGLVNEGRHYFSSMIHEHKIEPNIKHYGCMVDLFGRAGLLKEAEELIESMPMAPDVATWGALLGACRKHHDNEMGERVGRKLIQLQPNHDGFHVLLSNIYASKGHWGNVLEIRGIMAQHGVVKTPGCSMIEANGIVHEFLAGDKTHPQISDIEHMLDEVSAKLKIEGYVPTTSEVSLDIDDEEKETALFRHSEKLAVAFGLITIAPPTPIRVMKNLRICNDCHTVVKLISKAFDREIVVQYI* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0820 757 Gene3D Tetratricopeptide repeat domain 201 288 IPR011990 GO:0005515
Vra5g0820 757 Gene3D Tetratricopeptide repeat domain 5 122 IPR011990 GO:0005515
Vra5g0820 757 Gene3D Tetratricopeptide repeat domain 289 416 IPR011990 GO:0005515
Vra5g0820 757 Gene3D Tetratricopeptide repeat domain 123 200 IPR011990 GO:0005515
Vra5g0820 757 Gene3D Tetratricopeptide repeat domain 530 604 IPR011990 GO:0005515
Vra5g0820 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vra5g0820 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Vra5g0820 757 Pfam DYW family of nucleic acid deaminases 682 755 IPR032867 GO:0008270
Vra5g0820 757 Pfam PPR repeat 205 230 IPR002885 -
Vra5g0820 757 Pfam PPR repeat 171 200 IPR002885 -
Vra5g0820 757 Pfam PPR repeat 235 265 IPR002885 -
Vra5g0820 757 Pfam PPR repeat 143 164 IPR002885 -
Vra5g0820 757 Pfam PPR repeat 542 566 IPR002885 -
Vra5g0820 757 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 742 - -
Vra5g0820 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vra5g0820 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Vra5g0820 757 Pfam E+ motif 651 677 IPR046849 -
Vra5g0820 757 PANTHER OS03G0314400 PROTEIN 6 742 - -
Vra5g0820 757 TIGRFAM PPR: pentatricopeptide repeat domain 337 368 IPR002885 -
Vra5g0820 757 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Vra5g0820 757 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Vra5g0820 757 TIGRFAM PPR: pentatricopeptide repeat domain 441 469 IPR002885 -
Vra5g0820 757 TIGRFAM PPR: pentatricopeptide repeat domain 171 200 IPR002885 -
Vra5g0820 757 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Vra5g0820 757 Pfam E motif 584 646 IPR046848 -
Vra5g0820 757 Pfam PPR repeat family 365 411 IPR002885 -
Vra5g0820 757 Pfam PPR repeat family 66 115 IPR002885 -
Vra5g0820 757 Pfam PPR repeat family 467 513 IPR002885 -
Vra5g0820 757 Gene3D Tetratricopeptide repeat domain 417 529 IPR011990 GO:0005515
Vra5g0820 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 365 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0820 Vra-Chr5 13909935 13913873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0820 70 755 Glycoside Hydrolase AT3G49170 31.250 5.39e-114 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0820 - - gmx:100789149 1335.09