LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0814	ATGGAAAGTGTCTCTCCCTCGCATACGATTTTGGGTCTGGGGTTTGAACCCGATGTGCAGCGGCGTGGAGGCGACGGCGTCACCGTCATCGATGATGGGAGAGAAGGAGTTGTAGTGGTTGAGGCAATGATCGGGGCGAGGAAGGAGATGCACCGCCGGTGTTACCTCTGGTCGCCATTTACGGTGGCTGAATTACAGAGTAATAACGAAGTGACTAATGGTTTCACTGAAAATGAGACCACCATCCAGAAAAGGCATCATCCTTTGCAGGTTGCGAAGCGCTTAGAGAAGTTCCAAAAATCCATGGAAGCATTTAACAACCTGAAAGATGGAATCATAAACCTTGGACGAGGCTTTCCTAACTTTGATGGTCCAGAGTTTATAAAGGAAGCAGCAATTCAAGCAATAAGGGATGGGAAAAATCAGTATGCACGAGGTTCTGGAGTTCCAGAGTTGAACATTGCTATTGCTGATAGATTTAGGAAAGATACTGGATTAGTCATAGACCCTGATAATGAAGTTACTGTTACAAATGGATGCTTGGAAGCAATTGCTGCAACTGTGCTAGGATTAATAAATCCCGGCGATGAGGTTATTCTCTTTTCTCCTTTATATGATTGTTATGAAGGTAATTTAGCCATGGCTGGTGCAAAAATAGTAAGCATCCCTCTGCAATCTCCAGATTTTGCTATCCCCATTGAAAAATTGAAGTCCATTATGTCAAGGAGTACACGTGCCATTCTTATAAATACTCCTCACAACCCTACGGGAAAGATGTTCTCTCTGCAGGAGCTCAATGCCATTGCATCCATTTGCATTGAGAACGATGTTCTTGTTTTTGCTGATGAAGTTTATCATAAGTTGGCATTTGATATGGAACACATTTCTATAGCTTCTTTGCCTGGAATGTTTGAAAGGACCGTGACAATGAACTCAATGGCAAAGACATTTAGCCTAACAGGATGGAGGATTGGTTGGGCCATAGCACCCTCACACCTGACATGGGGGCTGCGACAGGCACATTCTTTCATCACTTTCTCAAACGCCACTCCTTTGCAGTGTGCAGCTGCTGTAGCTCTTAGGGCACCAGAGTCTTATTATTTGGAGCTGAAGAGGGATTATAGGGCAAAGAGGGATATTTTGGTGGATGGATTAAAGGCCGTTGGCTTTAAGGTATTCCCACCCGATGGAGCATTCTTTGTTTTGGCAGATCATACCCCTTTTGGATTGGAAAACGATGTTGCATTTTGTGAATATCTGCTTAAGGAGGTGGGGGTGCTGGCAATTCCTTGCAGTGTGTTTTGCTTGAATCACGAAGAGGGAAAGAACCTAGTCAGATTTGTTTTCTGCAAAGATGATGAAACTCTTAGGGTCGCGGTTGAGAGAATGAAGGAGAAGCTTAGAAAATGA	1410	0.4404	MESVSPSHTILGLGFEPDVQRRGGDGVTVIDDGREGVVVVEAMIGARKEMHRRCYLWSPFTVAELQSNNEVTNGFTENETTIQKRHHPLQVAKRLEKFQKSMEAFNNLKDGIINLGRGFPNFDGPEFIKEAAIQAIRDGKNQYARGSGVPELNIAIADRFRKDTGLVIDPDNEVTVTNGCLEAIAATVLGLINPGDEVILFSPLYDCYEGNLAMAGAKIVSIPLQSPDFAIPIEKLKSIMSRSTRAILINTPHNPTGKMFSLQELNAIASICIENDVLVFADEVYHKLAFDMEHISIASLPGMFERTVTMNSMAKTFSLTGWRIGWAIAPSHLTWGLRQAHSFITFSNATPLQCAAAVALRAPESYYLELKRDYRAKRDILVDGLKAVGFKVFPPDGAFFVLADHTPFGLENDVAFCEYLLKEVGVLAIPCSVFCLNHEEGKNLVRFVFCKDDETLRVAVERMKEKLRK*	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g0814	469	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	312	325	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Vra5g0814	469	Gene3D	Aspartate Aminotransferase, domain 1	109	463	IPR015422	GO:0003824
	Vra5g0814	469	PANTHER	FI04487P	92	469	-	-
	Vra5g0814	469	Gene3D	-	125	363	IPR015421	GO:0003824
	Vra5g0814	469	PANTHER	FI04487P	92	469	-	-
	Vra5g0814	469	Pfam	Aminotransferase class I and II	112	462	IPR004839	GO:0009058\|GO:0030170
	Vra5g0814	469	Coils	Coil	453	469	-	-
	Vra5g0814	469	CDD	AAT_like	113	465	-	-
	Vra5g0814	469	SUPERFAMILY	PLP-dependent transferases	108	468	IPR015424	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0814	Vra-Chr5	13825355	13837103	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0814	K23977		-	gmx:100818968	618.616