Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0774 ATGCGGTGTTCTTACGGGGTTTCTAACTACTACAAAAACCCCTCTCGTGACCTTCTCTTACACCTCAATTGCTTTCACAGCTTCCCTTTCAAAGAAACAATGGCGCGTAGGGTTTCGATTTGCTCCTTCTTCTTCGTCTTTGCACTTTCTCTTATCGCCTCTCAGATCTCTGCGGAGGAGTCCTCTCAGACTAAGGAATTCGTACTCACACTGGATCACTCCAACTTTCACGACACTATCAGCAAGTACGATTTCATCGTTGTCGAGTTCTACGCTCCATGGTGTGGCCACTGCAAGAATCTTGCTCCTGAGTATGAGAAAGCTGCTTCAATCTTGAGCAGTCATGATCCTCCGATTGTTTTGGCTAAAGTTGACGCCAATGAAGAGAAGAACAAAGCTCTTGCATCGGAATATGATGTTAAGGGATACCCCACACTTAAGATTGTGAGGAATGGGGGAAAGAATGTTCAGGAGTACAAAGGTCCCCGTGAAGCCGATGGCATCGTTGATTATTTGAAGAGACAGAGTGGTCCTGCTTCAACTGAAATTAAATCTGCCGATGAAGCTACAGCTTTTATTGGTGAAAATAAAGTTGTTATTGTTGGAATTTTCCCGAAATTTTCTGGCGAGGAGTTTGATAACTTTACTGCCTTAGCAGAGAAGTTGCGTGCTGATTATGACTTTGGTCACACCCTGAATGCTAAACACCTTCCAAGAGGTGAATCATCAGTCGCTGGCCCTATAATTAGGTTATTCAAGCCGTTCGATGAACTTTTTGTTGACTCCAAGGATTTCCATGTGGATACTCTAGAGAAATTTGTTGAGGAGTCCAGTACCCCTGTCGTTACTGTGTTTAACAATGATCCTAGCAATCACCCTTTTGTTGTCAAATTCTTCAACAGCCCCAATGCAAAGGCAATGTTGTTCATCAACTTCACTGCTGAAAGTGCTGAATCTTTCAAATCAAAATACCGTGAAGCTGCTGAGAAATTTAAACAACAGGGTGTAAGCTTTCTGGTTGGAGATGTAGAGTCTAGTCAAGGAGCTTTCCAGTACTTTGGACTGAAGGAAGAACAAGTACCTTTAATTATCATTCAACATAATGACGGGAAGAAATATTTTAAGCCCAATTTGGAAGCCGAACACATTCCAACTTGGTTGAAGGCATACAAGGAGGGTAACATTGCACCATATGTGAAATCTGAACCTGTTCCTGAAACTAACAACGAACCAGTTAAAGTGGTAGTTGGGGAAAGTCTCCAGGACATCGTTTTCAAGTCTGGGAAGAACGTTCTGCTGGAGTTTTACGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCTATATTGGACGAAGTTGCTATCTCATATCAAAATGATGCTAATGTTATTATTGCCAAACTGGATGCAACTGCCAACGATATCCCAGGTGATACCTTTGATGTCCAAGGTTATCCAACCCTGTACTTCAGGTCATCAAGTGGAAATCTATTACAATACGACGGTGGCAGGACCAAGAAAGACATCATAGAATTCATTGAAAAGAACCGGGACAAACCTGCCCAGCAAGAACAAGGAACAGATAAACCTGCTCATGCTGAACAAGTAAAAGATGAGCAAGAATCAGGAAAAGATGAGCTTTGA 1644 0.4258 MRCSYGVSNYYKNPSRDLLLHLNCFHSFPFKETMARRVSICSFFFVFALSLIASQISAEESSQTKEFVLTLDHSNFHDTISKYDFIVVEFYAPWCGHCKNLAPEYEKAASILSSHDPPIVLAKVDANEEKNKALASEYDVKGYPTLKIVRNGGKNVQEYKGPREADGIVDYLKRQSGPASTEIKSADEATAFIGENKVVIVGIFPKFSGEEFDNFTALAEKLRADYDFGHTLNAKHLPRGESSVAGPIIRLFKPFDELFVDSKDFHVDTLEKFVEESSTPVVTVFNNDPSNHPFVVKFFNSPNAKAMLFINFTAESAESFKSKYREAAEKFKQQGVSFLVGDVESSQGAFQYFGLKEEQVPLIIIQHNDGKKYFKPNLEAEHIPTWLKAYKEGNIAPYVKSEPVPETNNEPVKVVVGESLQDIVFKSGKNVLLEFYAPWCGHCKQLAPILDEVAISYQNDANVIIAKLDATANDIPGDTFDVQGYPTLYFRSSSGNLLQYDGGRTKKDIIEFIEKNRDKPAQQEQGTDKPAHAEQVKDEQESGKDEL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0774 547 MobiDBLite consensus disorder prediction 514 547 - -
Vra5g0774 547 CDD PDI_b_family 180 276 - -
Vra5g0774 547 SUPERFAMILY Thioredoxin-like 181 280 IPR036249 -
Vra5g0774 547 SUPERFAMILY Thioredoxin-like 379 517 IPR036249 -
Vra5g0774 547 ProSiteProfiles Thioredoxin domain profile. 47 177 IPR013766 -
Vra5g0774 547 CDD PDI_a_family 69 172 - -
Vra5g0774 547 SUPERFAMILY Thioredoxin-like 68 178 IPR036249 -
Vra5g0774 547 TIGRFAM pdi_dom: protein disulfide-isomerase domain 72 175 IPR005788 GO:0003756
Vra5g0774 547 TIGRFAM pdi_dom: protein disulfide-isomerase domain 416 516 IPR005788 GO:0003756
Vra5g0774 547 PANTHER PROTEIN DISULFIDE-ISOMERASE 43 536 - -
Vra5g0774 547 Pfam Thioredoxin 412 515 IPR013766 -
Vra5g0774 547 Pfam Thioredoxin 68 173 IPR013766 -
Vra5g0774 547 ProSiteProfiles Thioredoxin domain profile. 390 518 IPR013766 -
Vra5g0774 547 CDD PDI_b'_family 295 391 - -
Vra5g0774 547 Gene3D Glutaredoxin 406 520 - -
Vra5g0774 547 Gene3D Glutaredoxin 176 280 - -
Vra5g0774 547 Gene3D Glutaredoxin 57 175 - -
Vra5g0774 547 PRINTS Thioredoxin family signature 86 94 - -
Vra5g0774 547 PRINTS Thioredoxin family signature 94 103 - -
Vra5g0774 547 PRINTS Thioredoxin family signature 139 150 - -
Vra5g0774 547 PANTHER PROTEIN DISULFIDE ISOMERASE 43 536 - -
Vra5g0774 547 Pfam Thioredoxin-like domain 204 388 - -
Vra5g0774 547 Gene3D Glutaredoxin 281 405 - -
Vra5g0774 547 CDD PDI_a_PDI_a'_C 411 513 - -
Vra5g0774 547 ProSitePatterns Thioredoxin family active site. 432 450 IPR017937 -
Vra5g0774 547 TIGRFAM ER_PDI_fam: protein disulfide isomerase 68 547 IPR005792 GO:0003756
Vra5g0774 547 SUPERFAMILY Thioredoxin-like 278 409 IPR036249 -
Vra5g0774 547 ProSitePatterns Thioredoxin family active site. 87 105 IPR017937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0774 Vra-Chr5 13262999 13266901 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0774 K09580 - gmx:100170705 933.324