Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0767 ATGGTGAAGGTGTGGTGGTGGAGACGGTGTTTTCCGTTCGCTTTCATTTTAACGGCGTTTATTGGTGGCGCATATGGTGGCAATGTCACCTACGACGGAAGATCCTTAATCATTGATGGAGAGCATAGAATCCTATTCTCCGGTTCAATTCATTATCCTCGCAGCACTCCTCAGATGTGGCCTAATTTAATTGCGAAAGCTAAGGAAGGTGGATTAGATGTCATACAAACTTACGTGTTTTGGAACCTTCACGAACCTCAACAAGGCCAGTATAACTTTAGAGGAAGGCGTAATATAGTGAGATTCATTAAGGAAATTCAAGCACAGGGTTTATATGTAACCCTCAGAATTGGACCATACATTGAGAGTGAATGCACATACGGGGGTCTACCAATTTGGTTACATGATATTCCGGGTATCGTATTCAGATCTGACAATGAGCAATTCAAGTTTCACATGCAAAGGTTCGCTACGAAAATAGTCAACGTGATGAAATCGGCTAATCTTTATGTTTCACAAGGAGGACCTATCATACTATCACAGATTGAGAACGAATATGGGAACGTTGAAGGGGCGTTTCACGAGAAAGGACTATCTTATATTCGTTGGGCTGCCCAGATGGCCGTGGGACTCCAAACTGGCGTGCCTTGGGTGATGTGCAAGCAAGATAATGCTCCTGATCCCGTGATCAACACATGCAATGGCATGCAGTGCGGGACAACTTTTAAGGGGCCTAACTCACCTAACAAGCCTTCACTCTGGACAGAGAACTGGACAAGTTTTTACCAAGTGTTTGGTGGAGTACCATATATAAGATCGGCTGAAGACATTGCGTACAATGTTGCTCTGTTCATTGCAAAGAGAGGGAGCTATGTAAATTACTACATGTACCATGGAGGAACCAATTTCGACAGGATAGCCTCCGCTTTCGTAACGACATCCTATTATGACGAAGCTCCACTGGATGAATATGGTTTGGTTAGACAACCAAAATGGGGCCATCTTAAGGAGCTACATGCAGCAATCAAGTCATGTTCAAAATCTCTACTTTATGGTACTCAAACTAGCTTCAGCTTGGGCTCACGACAAAACGCTTATGTTTTCAAAAGTAACTCAACAGAATGTGCTGCCTTCCTGGAAAATAATGAAGATCGAACTGTCACAGTTCAATTGCAAAATATTTCATACCAGCTACCACCCAAATCAATCAGTATTCTACCAGACTGCAAGAATGTGGCCTTTAACACTGCCAAGGTACGCACACAAAATGACAGATCAATGAAGTCATATTTACGGTTCAATTCAGCAGAAAAATGGAAAGTGTACAAAGAAGCCATCCCGAGCTTTGACGATACTTCATTAAGAGCAAATACACTGTTGGATCAAATCAGCACAGCAAAAGATACATCTGACTATATGTGGTACACATTCAGGTTTAATGACAATTCTCCTAATGCTCAATCCATTCTAAGTGCATACAGCCAAGGACATGTTTTGCATACCTTCATCAACGGAAATTTAGTAGGTTCTGCTCACGGAAGTCACAGAAATGCGTCTTTTGTCATGGAAAACAAACTCAATCTCATAAAAGGGATGAACAATATTTCTTTCCTCAGTGCAACAGTTGGACTGCCGAACTCAGGAGCATATCTAGAGCACAAAGTCGCCGGTTTAAGTAGAGTGAAAGTTCAAGGCCAAGATATCACTAATCAAGCATGGGGATATCAGGTTGGTTTGTTGGGAGAAAAATTGCAAATCTACACAGCTAGTGGATCAAGTAAAGTTCAATGGGAAAGGTTTCAAAGCTCAACGAAGCCACTCACATGGTATAAGACCACATTTGATGCACCAGAGGGAAACGATCCGATAGTGCTTAACCTTGAGTCCATGGGAAAGGGTTATACTTGGATTAATGGCCAAGGTATAGGCCGATATTGGGTATCGTTCCAAACGCCACGGGGAACACCTTCGCAGAAATGGTATCACATACCCCGATCCCTCCTAAAATCTACAGGGAATCTACTAGTTCTGCTAGAAGAAGAAACTGGGAACCCACTTGAAATCACTCTGGACACAGTTTACATCACATCACAGTAA 2097 0.4244 MVKVWWWRRCFPFAFILTAFIGGAYGGNVTYDGRSLIIDGEHRILFSGSIHYPRSTPQMWPNLIAKAKEGGLDVIQTYVFWNLHEPQQGQYNFRGRRNIVRFIKEIQAQGLYVTLRIGPYIESECTYGGLPIWLHDIPGIVFRSDNEQFKFHMQRFATKIVNVMKSANLYVSQGGPIILSQIENEYGNVEGAFHEKGLSYIRWAAQMAVGLQTGVPWVMCKQDNAPDPVINTCNGMQCGTTFKGPNSPNKPSLWTENWTSFYQVFGGVPYIRSAEDIAYNVALFIAKRGSYVNYYMYHGGTNFDRIASAFVTTSYYDEAPLDEYGLVRQPKWGHLKELHAAIKSCSKSLLYGTQTSFSLGSRQNAYVFKSNSTECAAFLENNEDRTVTVQLQNISYQLPPKSISILPDCKNVAFNTAKVRTQNDRSMKSYLRFNSAEKWKVYKEAIPSFDDTSLRANTLLDQISTAKDTSDYMWYTFRFNDNSPNAQSILSAYSQGHVLHTFINGNLVGSAHGSHRNASFVMENKLNLIKGMNNISFLSATVGLPNSGAYLEHKVAGLSRVKVQGQDITNQAWGYQVGLLGEKLQIYTASGSSKVQWERFQSSTKPLTWYKTTFDAPEGNDPIVLNLESMGKGYTWINGQGIGRYWVSFQTPRGTPSQKWYHIPRSLLKSTGNLLVLLEEETGNPLEITLDTVYITSQ* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0767 698 SUPERFAMILY Galactose-binding domain-like 403 557 IPR008979 -
Vra5g0767 698 Pfam Glycosyl hydrolases family 35 35 341 IPR031330 -
Vra5g0767 698 PANTHER BETA-GALACTOSIDASE 13 696 - -
Vra5g0767 698 PANTHER BETA-GALACTOSIDASE RELATED 13 696 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 SUPERFAMILY (Trans)glycosidases 26 345 IPR017853 -
Vra5g0767 698 Gene3D Glycosidases 26 346 - -
Vra5g0767 698 Gene3D - 568 697 - -
Vra5g0767 698 SUPERFAMILY Galactose-binding domain-like 572 695 IPR008979 -
Vra5g0767 698 Pfam Beta-sandwich domain in beta galactosidase 349 419 IPR041392 -
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 605 619 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 PRINTS Glycosyl hydrolase family 35 signature 632 648 IPR001944 GO:0004553|GO:0005975
Vra5g0767 698 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0767 Vra-Chr5 13072009 13080428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0767 8 696 Glycoside Hydrolase AT5G63800 58.807 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0767 - - pvu:PHAVU_009G127500g 1349.73