Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0758 ATGGATGTAGGTTGCATCATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTGCGCTGCGATGGATGCCTTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTTGACGGATTCCTTAGGCTTATGGTTGTTGGACTTCTCTGGTCCACGTTCTCTGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACCCTTCGTGTTGGTGATCGGATTATTGTAGAAAAGTTATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCGACGTACACAATTCCTTTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATGGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA 540 0.4352 MDVGCIMSLLRPSAIYNFVTSYPALRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKLYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPTYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIMGRYVTCYHRPTNI* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0758 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 56 72 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g0758 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 136 155 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g0758 179 CDD S26_SPase_I 59 168 IPR019533 GO:0004252|GO:0006465
Vra5g0758 179 Gene3D Umud Fragment, subunit A 65 176 - -
Vra5g0758 179 SUPERFAMILY LexA/Signal peptidase 57 173 IPR036286 -
Vra5g0758 179 ProSitePatterns Signal peptidases I signature 3. 141 154 IPR019758 GO:0004252|GO:0016021
Vra5g0758 179 TIGRFAM sigpep_I_bact: signal peptidase I 47 173 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g0758 179 PANTHER CHLOROPLAST PROCESSING PEPTIDASE-LIKE 85 178 - -
Vra5g0758 179 PANTHER CHLOROPLAST PROCESSING PEPTIDASE-LIKE 7 82 - -
Vra5g0758 179 PANTHER SIGNAL PEPTIDASE I 7 82 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g0758 179 PANTHER SIGNAL PEPTIDASE I 85 178 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vra5g0758 179 Pfam Signal peptidase, peptidase S26 45 171 IPR019533 GO:0004252|GO:0006465
Vra5g0758 179 ProSitePatterns Signal peptidases I serine active site. 65 72 IPR019756 GO:0004252|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0758 Vra-Chr5 12942083 12946443 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0758 K03100 - gmx:100306121 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0758 5 12942083 12946443 Vra5g0758 5 12942083 12946443 ECH