Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0751 ATGGAGCTGCCGGAGTGCCCGGTGTGCCTTCAGTCCTTCGACGACCGCGACGCAATTCCTCGGGTCTTGTCATGTGGACACTCCGTTTGCGAAGCTTGTCTCGCGGAGCTTCCGCAACGGTACCCGAATACTATTCGGTGCCCCGCTTGCACCCAACTCGTGAAGTATCCTTCTCAACAAGGCCCTTCTTCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCGCTCCAACACTCCTCTTCTTCTTCTAATCATTCCCACAAACACAACCAACGGTCCACGGTCAATTCTTGTAGCGATCACTCTTCGTTCTGGTCCCCTGAGTTCTATGATGCATGGAAGAATTGGATTCTGCCGCTCGACGCTGTTTTAACTGACGACCATTGTCTTGGCCGGTTCAGTTCGTCCAAGGGTAGGGTTTGTTTCGGAGTTAACCGATGCGTGAGTCTCGCTCCGATTGTTTGTTTCTCTCCTGGGAATGACTCTAAGTTTAGGTTTAGTTATGTTGCATGGGTGATTAAGTGTTTGGAGGGGATGAGCGAGGCTGCGAGAGAGGAGTTAACATGGATTCTTGAAGCTACCGTGAGACAGAGGAGGGTGTGTGGGGTTTTTGGGTTGTGGAGTGAAGGGGCGGAGGGACCTCTGTATATGGTGTGTGAGAGGCAAAGCGGTAATCTTTTAGACAAATTTGGTGAATTGGGAAATGGGTTTGTTGGTGGGAATGAGGATGGTTTGGAGTTGGACACTAGTGGGATTTTTAATTTTTTAATGATTGGGAAGGGTATATGTGAAGCTGTGCTTTCTTTGCATTTGGAAGGTTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTCGGTGGGATTTGTGTTGATTTGAATGAGGTATTGGGGATGGGAAGGCGGTTGCATGCTGTTTCCGGTAAACATGAGAAAGAAGCAATGTCTAAAGATTGCTTGGAAAATGAGATTTTTGTAAGTCCTGAGGTTTTGTATGAGTTGGTGCACATGAGGAGATCTGCTCGAGATAGTGGCCATTTGAGATATCCAATTGGGTATGGCTCAGATGTATGGTCATTGGCCCGTGTACTGCTATGGCTTCTTATTGGAAATGTGCTGCCTCGGAATACCTTGGAAATGAATGAAGAGAGTGATGGTGATAGCACAGCTAGTTATGTGTGTTGGGTGGAGAAAGTTGGTTCTGTTTTGGAAGACAAACTAGGCTCTGAGTATCTGTCACTGGGGAGGACTCTTTGCAAATGTTTGGACGTCAATCCAGTAAACCGTCCAGATGTGATAGATGTAAGGAAGTGCATTCAGGATAAGTTAGTCAAACCTCAATTTGAATTTCTGGGAAACTTAGAAGTCACAATAAGTAAGGACAGTACAGGTCGCTGTCTGGTTCTAGGGGAGTTGTCTCTGTTGCCTAAGGAATGGTCTGACGAACCAAGAAAGCATGAGTTGCGGGAGAGAGAAATTGGTGGTCATCCAAATTTTGTTCAAGATGGTCAAGACAAGTCTGTCGAGGACTCTGCTGCTGGTTTATCTGGGGGATTAACTGAACTAAAAGATCTGCGAGGCCATCTTGATTGTGTCAGTGGATTGGCTGTTGGAGGCGGGTATTTATTCAGCTCCTCATTTGACAAAACTGTTCGCGTATGGTCCTTGCAGGACCTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGCTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATTTGGGGAGTTGCTGCCCCTCTTAGGCAAGATCCCTTAAGGAAATGGAATGAGAACAAGGATTGGCGTTTTAGTGGTATACACTCCTTGGCTGTTTCCAAAAATCATTCTATTTACACTGGAAGCGGAGATAGAACAATCAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGTCATAGATCTGTAGTTTCCACACTTGCTGTTTGTGATGAGGTTCTTTATAGTGGTAGCTGGGATGGTACAGTTCGGTTGTGGAGTCTAAATGACCACTGTCCATTGACAGTTCTGGGGGAAGATACGCCTGCAGATATGAGGTCTATCATGGCTATTACTGTAGATAGGCATTTGCTTGTTGCAGCACATGAGAATGGATCCATAAAGGTCTGGAGGAATGATGTGTTCATGAACTCCAAAACATTGCATAATGGGTCCATTTTTGCAATGAGTATGCAGGGAAAATGTCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGACGAGTTTGAACTGGATGTCAAACCATATGGATCCATTCCACACAGTTCTGTTGTTACAGCTATATTATACAGCCAGGGAAAACTGTACGTCGGATATGCTGACAAGTCTATTAAGGAAAATCTCGGTCGTGTTCAAAAGCGTTTCACTGACTTCACGAGCTTGAACTATTGGGTTGTTGGCGACTACTATCGTCTCGTGAACTCCGTCAACGCCTTCGAGCCTCAGATTAAGGCGCTCTCCGATGAACAGCTGGCCGCGAAGACCTCCGAGTTTCGCCGCCGCCTCGCGCGAGGGGCTACGCTTGCTGACATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAACTTAGAATGCGTCATTTCGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACCGGGGAGGGTAAAACCTTGGTTTCCACACTAGCTGCTTATCTAAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTTAACGATTATTTAGCTCAGCGTGACGCTGAATGGATGGGACGCGTTCATCGTTTCTTAGGTCTATCTGTCGGTCTTATTCAGAGAGGAATGAATGCTGAAGAACGAAGAATCAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGATTTGATTACCTGCGAGATAATCTGGCTGGAAATCGTGACCAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGGAATTGTTGATGAAGTGGATTCTGTCTTGATAGACGAGGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTAAACAGGGCACTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACCGAGGAAGGAATTGCTCTTGCCGAAATGGCTTTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCAAGATTTGTGATTAATGCTATAAAAGCTAAAGAATTCTATCGTCGAGATGTGCAATACATTGTTAGAGATGGAAAGGCTTTGATTATCAATGAGCTGACAGGTAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATATCAGTCATTATTCAAGCTCTATCCGAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTTAGGATGCCAGTCATTGAAGTACCCACAAATCTTCCTAATATTCGAAAAGATTTACCAATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTACGCCGAGAAGTTGAATATATGTTTGGACAAGGTCGGCCTGTCTTAGTTGGAACAACTAGTGTAGAAAATTCGGAACTTTTGTCTGGTATGCTTTGGGAATGGAATATTCCTCACAATGTTCTGAATGCTAGACCCAAGTATGCTGCAAAAGAAGCAGAAGTTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCCGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGTTTACTTTCATTTTTGACACGGGAGGATCCAAACGTTGAACTTGCAGGGGAAGCTATTTCACAAATGGTGCTTCCAAAGATAACAGTTGGATCATCATCAATGGCCTTACTGGCTAAGACATCCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAAGCTAAATCTTTTATCTTGGAGGCTATTGAAATGAATCTTTCATATAGTTTGGAAGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGACCTACCCTCTTGGTCCAACTGTAGCACTTACCTATCTGTCAGTTTTGAAGGATTGTGAAGAACATTGTTTGAAAGAAGGTTCTGAGGTAAAAAGGCTTGGGGGACTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTGCGTGGCAGAGCAGGGAGACAAGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTAAGACTTATCTCAAAGATTACAAATGATGAGGATCTGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTTTTGGCGCTGCAAATCAATGCAGAAAAATTCTTCTTTGGCATAAGGAAGAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATACTCCAGTACATGCAAGCAGTGGTTGACGAGATCGTCTTCAATAATATTGATCCGGTGAAGCATCCACGTAGCTGGGGTTTGAGCAAGCTCTTGAAAGAGTTTGTGACTGTTGGTGGAAAGCTGTTGCATGAATCTTTTGAAGGAATTAGTGATCACACTTTGCTAAATTCACTTGGGCTACTAAATGATGCAAGTTCAGTTGATATTGTAAACTTTTCTCTTCCAAATTTGCCAGCGCCTCCAAATGCCTTCAGGGGAATACGCAGGAAGAGCTCGTCATTAAGACGATGGCTTGCTATTTGCACAGATGATTTAATTGGGAATGGGAAGTATCAAACCACTTCTAATCTTCTTCGCAAGTATCTTGGAGATTTTTTAATTGCTTCATATTTACATGTTGTTGAAGAGTCTGGTTATGATGAGACACATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGGTTTTTTATCTCAATGCTAAGTGCCACTCGGAGGTTAACTGTAGAAGCACTGCTGCGGTATTGGACATCTCCAATGGAATCTGATGAACTATTTTTATCATGA 5430 0.4355 MELPECPVCLQSFDDRDAIPRVLSCGHSVCEACLAELPQRYPNTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQHSSSSSNHSHKHNQRSTVNSCSDHSSFWSPEFYDAWKNWILPLDAVLTDDHCLGRFSSSKGRVCFGVNRCVSLAPIVCFSPGNDSKFRFSYVAWVIKCLEGMSEAAREELTWILEATVRQRRVCGVFGLWSEGAEGPLYMVCERQSGNLLDKFGELGNGFVGGNEDGLELDTSGIFNFLMIGKGICEAVLSLHLEGLVAGCLGLSCFSFDELGGICVDLNEVLGMGRRLHAVSGKHEKEAMSKDCLENEIFVSPEVLYELVHMRRSARDSGHLRYPIGYGSDVWSLARVLLWLLIGNVLPRNTLEMNEESDGDSTASYVCWVEKVGSVLEDKLGSEYLSLGRTLCKCLDVNPVNRPDVIDVRKCIQDKLVKPQFEFLGNLEVTISKDSTGRCLVLGELSLLPKEWSDEPRKHELREREIGGHPNFVQDGQDKSVEDSAAGLSGGLTELKDLRGHLDCVSGLAVGGGYLFSSSFDKTVRVWSLQDLSHLHTFRGHENKVMALAYVDEEEPLCISGDSGGGIFIWGVAAPLRQDPLRKWNENKDWRFSGIHSLAVSKNHSIYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHCPLTVLGEDTPADMRSIMAITVDRHLLVAAHENGSIKVWRNDVFMNSKTLHNGSIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKPYGSIPHSSVVTAILYSQGKLYVGYADKSIKENLGRVQKRFTDFTSLNYWVVGDYYRLVNSVNAFEPQIKALSDEQLAAKTSEFRRRLARGATLADIQAEAFAVVREAAWRKLRMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRINYRCDITYTNNSELGFDYLRDNLAGNRDQLVMRWPKPFHFGIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLKQGTHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVINAIKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFGQGRPVLVGTTSVENSELLSGMLWEWNIPHNVLNARPKYAAKEAEVVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELAGEAISQMVLPKITVGSSSMALLAKTSLMAKYVSKSEGKSWTYQKAKSFILEAIEMNLSYSLEELEKLANEESETYPLGPTVALTYLSVLKDCEEHCLKEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFNNIDPVKHPRSWGLSKLLKEFVTVGGKLLHESFEGISDHTLLNSLGLLNDASSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLHVVEESGYDETHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTSPMESDELFLS* 1810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0751 1809 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 813 1807 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 SUPERFAMILY WD40 repeat-like 523 813 IPR036322 GO:0005515
Vra5g0751 1809 Coils Coil 1397 1417 - -
Vra5g0751 1809 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 905 1068 IPR014001 -
Vra5g0751 1809 SMART SecA_PP_bind_2 1047 1158 IPR011130 GO:0016020|GO:0017038
Vra5g0751 1809 Gene3D Helical scaffold and wing domains of SecA 1665 1796 - -
Vra5g0751 1809 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vra5g0751 1809 SMART SecA_DEAD_2 823 1202 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vra5g0751 1809 SUPERFAMILY Helical scaffold and wing domains of SecA 1527 1629 IPR036266 -
Vra5g0751 1809 Gene3D Transferase(Phosphotransferase) domain 1 253 453 - -
Vra5g0751 1809 TIGRFAM secA: preprotein translocase, SecA subunit 844 1615 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 813 1807 - -
Vra5g0751 1809 CDD SF2_C_secA 1220 1491 IPR044722 -
Vra5g0751 1809 SMART ring_2 6 50 IPR001841 -
Vra5g0751 1809 SUPERFAMILY Helical scaffold and wing domains of SecA 1696 1805 IPR036266 -
Vra5g0751 1809 SUPERFAMILY Pre-protein crosslinking domain of SecA 1046 1167 IPR036670 GO:0016020|GO:0017038
Vra5g0751 1809 Gene3D - 1048 1168 - -
Vra5g0751 1809 CDD DEXDc_SecA 858 1214 - -
Vra5g0751 1809 PRINTS SecA protein signature 879 903 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PRINTS SecA protein signature 917 931 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PRINTS SecA protein signature 933 943 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PRINTS SecA protein signature 986 1006 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PRINTS SecA protein signature 1139 1161 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PRINTS SecA protein signature 1176 1193 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 PRINTS SecA protein signature 1213 1226 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1215 IPR027417 -
Vra5g0751 1809 Gene3D - 518 610 IPR015943 GO:0005515
Vra5g0751 1809 Pfam SecA DEAD-like domain 836 1201 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vra5g0751 1809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vra5g0751 1809 Hamap Protein translocase subunit SecA [secA]. 811 1799 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vra5g0751 1809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 691 - -
Vra5g0751 1809 Pfam RING-type zinc-finger 6 48 IPR027370 -
Vra5g0751 1809 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Vra5g0751 1809 PRINTS G protein beta WD-40 repeat signature 636 650 IPR020472 -
Vra5g0751 1809 PRINTS G protein beta WD-40 repeat signature 676 690 IPR020472 -
Vra5g0751 1809 Pfam WD domain, G-beta repeat 656 689 IPR001680 GO:0005515
Vra5g0751 1809 Pfam WD domain, G-beta repeat 525 558 IPR001680 GO:0005515
Vra5g0751 1809 Gene3D - 1217 1523 IPR027417 -
Vra5g0751 1809 Gene3D - 838 1215 IPR027417 -
Vra5g0751 1809 Pfam SecA Wing and Scaffold domain 1521 1796 IPR011116 GO:0016020|GO:0017038
Vra5g0751 1809 Pfam SecA preprotein cross-linking domain 1058 1158 IPR011130 GO:0016020|GO:0017038
Vra5g0751 1809 SUPERFAMILY RING/U-box 5 59 - -
Vra5g0751 1809 SMART WD40_4 561 601 IPR001680 GO:0005515
Vra5g0751 1809 SMART WD40_4 692 733 IPR001680 GO:0005515
Vra5g0751 1809 SMART WD40_4 734 771 IPR001680 GO:0005515
Vra5g0751 1809 SMART WD40_4 780 816 IPR001680 GO:0005515
Vra5g0751 1809 SMART WD40_4 652 689 IPR001680 GO:0005515
Vra5g0751 1809 SMART WD40_4 521 558 IPR001680 GO:0005515
Vra5g0751 1809 SMART WD40_4 607 649 IPR001680 GO:0005515
Vra5g0751 1809 SUPERFAMILY Protein kinase-like (PK-like) 196 449 IPR011009 -
Vra5g0751 1809 ProSiteProfiles SecA family profile. 819 1523 IPR014018 -
Vra5g0751 1809 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 691 IPR001680 GO:0005515
Vra5g0751 1809 Gene3D Helical scaffold and wing domains of SecA 1526 1635 - -
Vra5g0751 1809 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 567 IPR001680 GO:0005515
Vra5g0751 1809 CDD RING-HC_TRIM32_C-VII 5 51 - -
Vra5g0751 1809 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Vra5g0751 1809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1217 1504 IPR027417 -
Vra5g0751 1809 Gene3D - 611 832 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0751 Vra-Chr5 12815436 12856288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0751 523 761 Acyl Lipid Metabolism Gene Families AT3G18860 29.020 9.88e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0751 K03070 - gmx:100793437 3208.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0751 5 12815436 12856288 Vra5g0751 5 12815436 12856288 ECH