Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0750 ATGGCAATTCCAGTGATTGATTTTTCAAAGCTGAATGGAGAAGAAAGAGCCAAAACTATGGCTCAGATTGCTAATGGCTGTGAAGAGTGGGGATTTTTTCAGTTGATCAACCATGGCATTCCAGAGGAACTCCTTGAGAGGGTGAAGAAGGTTGCCTCTGAGTTTTATAAGCTGGAAAGAGAGGAGAATTTCAAGAAGTCGACATCAGTGAAGCTACTAAGTGATTTAGCTGAAAAGAAGGACAGTGAAAAGCAGGAGTATGTGGATTGGGAGGACGTTATCACTCTCCTTGATGATAACGAGTGGCCAGAAAAAACACCAGGCTTCAGGGAAACCATGGCGGAATATCGGCGTGAGTTGAAGAAATTGGCAGAGAGGATGATGGAGGTGATGGATGAGAATCTGGGGTTACCCAAAGGATACATCAAGAAGGCACTGAATGGTGGAGATGGAGAGGGTGCATTCTTTGGCACCAAGGTGAGCCATTACCCTCCATGTCCCCATCCAGAGCTAGTGAAAGGTCTGCGAGCTCACACTGATGCAGGAGGTGTTATCCTTCTCTTCCAAGATGACAAGGTTGGTGGCCTCCAGATGCTCAAAGATGGGCAATGGATTGATGTGCAACCTCTGCCAAATGCCATTGTGATCAACACCGGTGATCAGATTGAGGTCCTGAGCAATGGAAGATACAAGAGTTGTTGGCACAGGGTTCTGGCCACTCCAGATGGGAACAGAAGATCAATTGCCTCCTTCTATAACCCATCATTCAAGGCCACCATATGTCCTGCACCTCAACTCCTGGAAAAACAAGACCAACAACTGGATGACACTTATCCTAAGTTTCTTTTTGGTGACTACATGTCTGTCTATGCTGAGCAGAAGTTCCTTCCCAAGGAACCAAGGTTCCGAGCTGTTAGGGCCATGTGA 927 0.466 MAIPVIDFSKLNGEERAKTMAQIANGCEEWGFFQLINHGIPEELLERVKKVASEFYKLEREENFKKSTSVKLLSDLAEKKDSEKQEYVDWEDVITLLDDNEWPEKTPGFRETMAEYRRELKKLAERMMEVMDENLGLPKGYIKKALNGGDGEGAFFGTKVSHYPPCPHPELVKGLRAHTDAGGVILLFQDDKVGGLQMLKDGQWIDVQPLPNAIVINTGDQIEVLSNGRYKSCWHRVLATPDGNRRSIASFYNPSFKATICPAPQLLEKQDQQLDDTYPKFLFGDYMSVYAEQKFLPKEPRFRAVRAM* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0750 308 Pfam 2OG-Fe(II) oxygenase superfamily 161 254 IPR044861 -
Vra5g0750 308 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 2 306 - -
Vra5g0750 308 SUPERFAMILY Clavaminate synthase-like 1 301 - -
Vra5g0750 308 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5-LIKE 2 306 - -
Vra5g0750 308 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 150 254 IPR005123 -
Vra5g0750 308 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 100 IPR026992 -
Vra5g0750 308 Coils Coil 113 133 - -
Vra5g0750 308 Gene3D - 2 308 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0750 Vra-Chr5 12780508 12782400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0750 1 257 Glycosyltransferase AT5G59530 33.704 9.42e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0750 K05933 - gmx:100790622 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0750 5 12780508 12782400 Vra5g0750 5 12780508 12782400 ECH