Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0716 ATGGGCGGATCAGTTTCAAAACGAAGGAGTTCTAGGCGACGTTCGTCCTCAAATTTTTTTCCTCGGTATCAATCGCCTTATTTGCCACAAAGCCAAGATCAAGGGTCTGTGAGGCATTACGGGTATTCATCTCAAAGCAATGGGGGTGGTCCTGCACCAGAACAAGGAAAGAAATCAGATGGGAAGTATTCAAGGATAGGTGATAATTATAAGAGCTTAGACCAGGTAACTGAAGCTTTATCAAATGCTGGGCTAGAATCTTCCAATCTCATTGTTGGTATTGATTTTACGAAGAGTAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGCCTGCATTACATTGGTCATGAACAAAATCCGTATGAGCAAGCTATATCTATCATTGGAAAAACTCTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACTCATGATCAAGAAGTTTTTAGTTTCTATCCTGATGAGAGATTTTGCCAAGGATTTGAAGAAGTGTTGGGACGATATAGGGAATTGGTCCCTCAGTTAAAACTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTCTTAGTGATTATAGCTGATGGCCAGGTGACGAGAAGTGTTGACACTGAGCATGGTCAGTTGAGTGCACAAGAAAAGAAAACTGTGGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCGATCATATTAGTTGGGGTTGGAGACGGACCGTGGGATATGATGAAACAATTTGACGATAACATCCCAGCACGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATAGATCAAGAAAGGAAACTGAGTTTGCATTGGCTGCTTTGATGGAAATACCCTCCCAGTACAAGGCTACAATAGAGCTCAATATATTGGGTACTCGAAGAGGGAAAGATATCGACAGGGTTCCTCTGCCGCCGCCTCTATACGGTGCAGCATCTTTCAATTCCCCAAAAACTTCCCGTCAGAACAGTTTTCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGGCCGAACCCTCCCGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCAGCAATCCTAAAGATATGGCCTTTGGATGCGGGCATCAGACATGCTGTGAGTGCGGACAAGAACTTGAGTTATGCCCCATTTGCAGGAGCACCATCGATACTAGAATAAAACTTTATTAG 1287 0.4281 MGGSVSKRRSSRRRSSSNFFPRYQSPYLPQSQDQGSVRHYGYSSQSNGGGPAPEQGKKSDGKYSRIGDNYKSLDQVTEALSNAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHYIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLGRYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATIELNILGTRRGKDIDRVPLPPPLYGAASFNSPKTSRQNSFRPSAPSSRHDVRPNPPATSASDNQVCPICLSNPKDMAFGCGHQTCCECGQELELCPICRSTIDTRIKLY* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0716 428 MobiDBLite consensus disorder prediction 347 364 - -
Vra5g0716 428 MobiDBLite consensus disorder prediction 345 380 - -
Vra5g0716 428 SMART VWA_4 87 290 IPR002035 -
Vra5g0716 428 ProSiteProfiles Zinc finger RING-type profile. 385 418 IPR001841 -
Vra5g0716 428 PANTHER RING-FINGER PROTEIN 1 428 - -
Vra5g0716 428 MobiDBLite consensus disorder prediction 16 52 - -
Vra5g0716 428 CDD RING-HC_RGLG_plant 384 428 IPR045317 GO:0061630|GO:0070534
Vra5g0716 428 Pfam Zinc finger, C3HC4 type (RING finger) 382 423 - -
Vra5g0716 428 SUPERFAMILY vWA-like 88 271 IPR036465 -
Vra5g0716 428 Pfam Copine 112 326 IPR010734 -
Vra5g0716 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 428 IPR013083 -
Vra5g0716 428 PANTHER COPINE FAMILY PROTEIN 1 1 428 - -
Vra5g0716 428 MobiDBLite consensus disorder prediction 1 66 - -
Vra5g0716 428 CDD vWA_copine_like 66 316 IPR010734 -
Vra5g0716 428 SUPERFAMILY RING/U-box 379 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0716 Vra-Chr5 11622209 11626113 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0716 K16280 - gmx:100809850 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0716 5 11622209 11626113 Vra5g0716 5 11622209 11626113 ECH