Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0711 ATGAGTAGTCGCCAGCTAGCAGCTAATCCAAAAATGTCCCAGAGGAAGGAGCGACGCATGTTCTCCACTTCTGATGACAGTGCCATGACCAAGCAGGTTCAGGCTACACATGCCCCAGATGGCCGTGAAATTGATGTCAAACCTATTCTACAAATCGTCGATGAAATTCTCCTTCGGTTCATTGCTCGCACTGTTGAGGGTTATGAAGTGAAAAGAGACCAAGATGCATTGGAGATGACTGCTGCTCTGGCTGAATTTGACATGCTTGACTCGCTGGCTTACATCATAAACAAAATTTCGTGTGAGCTATCATGCAAGTGTTCGGGAGGTGGAGATGCACATTCATCAACAATGGTGTTGCTGGGTTACATGTCTAGCTATGCATGGCATGCGAAAGTTGTGCTAACATTAGCAGCCTTTGCTGTTATTTTTGGAGAGTTTTGGCTTGTTGCTCAGTTGAGTGCTGAAAATACTCTTGCCAAGTCTGTGGCCCTTCTTAAGCAACTGCCAGATATTGCTGAGAATTTCATGTCATTGAAACCCCATTTTGAAGCACTCATTAGGCTGGTGAAGGCTGCAATGGATGTAACCACCTGCATCGTTGAATTCAAGGAGCTTCCATCTGAATACATTTCAGAGGACACACCTCCCATGTCTGTTGCCAGTACTCACATTCCTATTGCTTCCTACTGGGTCATCAGAAGTATTGTGGCATGTGCCTCCCAAATTGCTAGTCTCATAGGCACAAGAAATGAGTCCATTTCATCAACCACTGAGGCATGGGAGTTATCCAGTCTTGCTCACAAAGTTACTAGTATTCATGAGCACCTCAAGAGCCAACTGGTTCTTTGCTACCAATATATAGATGACAAGAGACATATAGAGGCATTCCATAATCTGATACGTCTTTTCGAGACAGTCCATATAGACAACATGAAAATTGTCAGAGCACTGATATATGCAAAGGATGATATCCTTCCACTTGTGGATGGAACTACAAAATCAAGGGTTAGTCTGGAGGTACTAAGGAGGAAACATGTGTTGCTGCTCATATCAGACCTTGATCTTTCACAAGAAGAGATCCTGGTACTTGATAATTTGTACAAAGATGCACGAGCGAGGGGTGACACACACTATGAGATGGTTTGGATCCCGGTTGTGGACAAAGGGATCTGGAATGAGGTGAACAAACAGAAATTTGAGTATTTGCAGTCATTGATGCCATGGTACAGTGTCTGTGATCCTTTCATCATTGAACCATCAGCAGTTAAGTACATCAAAGAAGTGTGGAATTTCTCAAAGACGGCTATTCTAGTGGCCCTTGATCCACAAGGCAGATTGTCCTCCCCTAATGCTGTCCATATGATATGGATTTGGGGCAATTTGGCCTTCCCCTTCACAAGTGAGAAAGAAGAATCACTGTGGAAGCAAGAGATTTGGAGCCTTGAACTGCTTGTTGATGGCATTGATCCTACAGTTTTAGAATGGATGGCAGATGGAAAACTGGTATGTCTGTATGGAGGTGAAGACCTGGAGTGGATTGAGAAATTCACAGCAACAGCATTGAGTGTGGCAAAAGCTGGGAAGTTCCAGCTGGAGATGGCGTACGTGGGAAAGAGCAACGCGAAGGAGCGGATGCAGAAGATGATAAAAACGTTCACTACGAGAAAGTTCAGTTACTTTTGGCCCAACGTGACCTCCATTTGGTTCTTCTGGACCCGTTTGGAGAGCATGTTGTACTCGAAGTTGCAGCATGGAAGGACGGTGGAAAACGACGAGATCATGAGCGAAGTGATGACTGTGCTGAGCTTCGACGGCAGTGATCGAGGGTGGGCGATTTTCTGCATGGGCGCCACTGAAATGGCCAGAGCGAAAGGTGACAGTGCTTTGATATGCTTGCAGGACTTCGAAAAGTGGGGGCCTAGAATCGAGGAAGATGGTGTGGTGAAAGCCATGAACGATTACCTCAACCAAAACAAACCCCCACATCACTGCAATCGTTTGATCCTTCCTGGGAGCACTGGTGGCATACCCCAGAAGGTTGTGTGTGCTGAATGTGGACGCCAAATGGAGAAATACTTCATGTATCGTTGCTGTGTTGAGTAA 2106 0.4549 MSSRQLAANPKMSQRKERRMFSTSDDSAMTKQVQATHAPDGREIDVKPILQIVDEILLRFIARTVEGYEVKRDQDALEMTAALAEFDMLDSLAYIINKISCELSCKCSGGGDAHSSTMVLLGYMSSYAWHAKVVLTLAAFAVIFGEFWLVAQLSAENTLAKSVALLKQLPDIAENFMSLKPHFEALIRLVKAAMDVTTCIVEFKELPSEYISEDTPPMSVASTHIPIASYWVIRSIVACASQIASLIGTRNESISSTTEAWELSSLAHKVTSIHEHLKSQLVLCYQYIDDKRHIEAFHNLIRLFETVHIDNMKIVRALIYAKDDILPLVDGTTKSRVSLEVLRRKHVLLLISDLDLSQEEILVLDNLYKDARARGDTHYEMVWIPVVDKGIWNEVNKQKFEYLQSLMPWYSVCDPFIIEPSAVKYIKEVWNFSKTAILVALDPQGRLSSPNAVHMIWIWGNLAFPFTSEKEESLWKQEIWSLELLVDGIDPTVLEWMADGKLVCLYGGEDLEWIEKFTATALSVAKAGKFQLEMAYVGKSNAKERMQKMIKTFTTRKFSYFWPNVTSIWFFWTRLESMLYSKLQHGRTVENDEIMSEVMTVLSFDGSDRGWAIFCMGATEMARAKGDSALICLQDFEKWGPRIEEDGVVKAMNDYLNQNKPPHHCNRLILPGSTGGIPQKVVCAECGRQMEKYFMYRCCVE* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0711 701 MobiDBLite consensus disorder prediction 1 38 - -
Vra5g0711 701 Pfam Sieve element occlusion N-terminus 24 308 IPR027942 -
Vra5g0711 701 Pfam Sieve element occlusion C-terminus 470 699 IPR027944 -
Vra5g0711 701 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 5 700 - -
Vra5g0711 701 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 5 700 IPR039299 GO:0010088
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0711 Vra-Chr5 11549985 11554128 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0711 - - gmx:100811452 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0711 5 11549985 11554128 Vra5g0711 5 11549985 11554128 ECH