Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0682 ATGCTCACTCCCCTGATGCTGCTGAAATCATCTTTCACTCCCATTTTCTTTGTGCAAACCCCTAAATCCAAAGCTCAAAAACTTCACCACGCATTCACCAAAACCTTTTTCACTAACAGCACGCCACCCGTTCGACATAATGCCTCTCTCAACGTCGCCACCCCACCACCCGCTTCCTCCGCCTACATCCACCTCCCTTTCTGCCGGAAACGCTGCCACTATTGCGACTTTCCCATCGTAGCTCTCGGTTCCGCCTCCACCCAAACCCACCACGACCCGCGCGTCTCCAACTACATCGACTGGCTCTGCCGGGAAATCACCGCCACCAAAGTGGACCAACACGCTTCCACCACGCCCCTCCAAACTGTCTATTTTGGCGGTGGGACGCCCTCTCTGGTGCCTCCTGCTATGGTTTCATCCGTTTTGGAGAGTCTGAGGGTGAAGTTTGGGCTTTGTAAAGACGCGGAAATATCGATGGAGATGGACCCCGGCACGTTTGGTGCTGAGAAGATGAGGGAGATGATAGCGTTGGGAGTGAATAGAGTGTCTTTGGGAGTTCAGGCGTTTCAGGAGGAGCTGTTGAGAGCGTGTGGGAGGGCACATGGGGTGCAAGAGATTCATGAGGCTATTAGTGTTGTGAAGTCATGTGGGGTTGAGAATTGGAGTATTGATCTCATAGCTTCGTTGCCTCATCAGAATTGTGAGATGTGGGAGGAAAGTTTAAGGCTCACCATTGAGTCACAACCTTCTCATGTGTCCGTTTATGACTTGCAAATTGAGCAAGGAACAAAATTTGGACGATTGTACTCACCAGGGGAATTTCCAATGCCTTCTGAAACACAATCGGCCGAGTTCTATAAGATGGCTTCAAGAATGCTTACTGATGCGAATTACAACCATTATGAAATCAGCAGCTACTGCAAAAGTGGGTACGAGTGCAAACACAACTTTATCTACTGGAAGAACGAGCCTTTCTATGCCTTTGGCCTTGGCTCTGCCAGTTTTGTTGGTGGGTTGAGGTATTCAAGACCAAGGAAGGTCAATGATTACATTAATTTTGTGCAGAATCTGGAAAATGGATTAGTAGATAGCTCTGGCGATGGTAACATTAATGCCAAGGACACGGCCATGGATGTGGTGATGCTGTCCCTAAGAACTGCACAAGGCCTAGACTTAAAGAGTTTCCAAGAATCATTTGGCAGCTCTGTTGTATTGTCATTGCTAGAGGCTTATAAACCTTATGTTGAGAGTGGACTTGTGGTTTGCTTGGATGAGCATAGGAGAACCATTATGGATGACCTTAACCATTCCTTTTTGTATAAAACTAACACAGAAAAGAGGGTGGCATACATAAGGCTAAGTGATCCAGAAGGTTTCCTCTTATCAAATGAGTTGATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGTTTGCACTCAGTACCAAGAAGCAAAAGCCACTTGA 1467 0.4724 MLTPLMLLKSSFTPIFFVQTPKSKAQKLHHAFTKTFFTNSTPPVRHNASLNVATPPPASSAYIHLPFCRKRCHYCDFPIVALGSASTQTHHDPRVSNYIDWLCREITATKVDQHASTTPLQTVYFGGGTPSLVPPAMVSSVLESLRVKFGLCKDAEISMEMDPGTFGAEKMREMIALGVNRVSLGVQAFQEELLRACGRAHGVQEIHEAISVVKSCGVENWSIDLIASLPHQNCEMWEESLRLTIESQPSHVSVYDLQIEQGTKFGRLYSPGEFPMPSETQSAEFYKMASRMLTDANYNHYEISSYCKSGYECKHNFIYWKNEPFYAFGLGSASFVGGLRYSRPRKVNDYINFVQNLENGLVDSSGDGNINAKDTAMDVVMLSLRTAQGLDLKSFQESFGSSVVLSLLEAYKPYVESGLVVCLDEHRRTIMDDLNHSFLYKTNTEKRVAYIRLSDPEGFLLSNELIALAFGVIDSWKVCTQYQEAKAT* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0682 488 Pfam Radical SAM superfamily 63 243 IPR007197 GO:0003824|GO:0051536
Vra5g0682 488 CDD Radical_SAM 68 279 - -
Vra5g0682 488 PANTHER COPROPORPHYRINIGEN III OXIDASE 37 472 IPR034505 -
Vra5g0682 488 SFLD anaerobic coproporphyrinogen-III oxidase like 59 426 - -
Vra5g0682 488 SFLD HemN-like, clustered with heat shock genes 59 426 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vra5g0682 488 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 37 472 - -
Vra5g0682 488 ProSiteProfiles Radical SAM core domain profile. 53 296 IPR007197 GO:0003824|GO:0051536
Vra5g0682 488 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 60 423 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Vra5g0682 488 Gene3D tm_1862 like domain 66 296 IPR023404 -
Vra5g0682 488 SUPERFAMILY Radical SAM enzymes 47 428 - -
Vra5g0682 488 SMART MiaB 58 288 IPR006638 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0682 - K07739 pvu:PHAVU_009G169000g 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0682 5 10903367 10905708 Vra5g0682 5 10903367 10905708 ECH