Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0647 ATGGCGGCAATCAGCAGCATCCGTTTACAATTTCCACGGAATTTAAACGATTCAAGGAAGAGGAATACGAGTTTTCATGCTCCGTGCAACATTACTAACGTGTTTAATAATAAACGAACGTTTTTGTCGGTGACCGCAAGTTGTAGTGATAATCCTCGGAAAATGGACACTGCCAGCAGAGTAAATGTGAATGGAATACACGTGGCGGAGGCTCCTCTTCAAGCAGGAAGGTTGGCAAAGGAAAGTGCAGCAGATGAAGCTATTGTTACCAGCTTGCGTGGAAGGTTTGTGGAGGATAAGTTTGTATTTAGGCAAATTTTTGTTATCAGGTCTTACGAAATTGGACCAGATAAAACTGCCACCATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTTTAAATCATGTCACTAGCTCTGGGATTGGGGGAGAAGGATTTGGAGCAACTCGCGAGATGAGCCTTCGAAAACTCATTTGGGTTGTTACTCGTATTCAACTTCAAGTTCAGAAATATAACAAATGGGGAGACGAAATTGAAGTTGACACTTGGGTCGATGCCGCTGGAAAGAATGGAATGCGAAGAGATTGGATAATCAGGGATCACTACACCAAAGAGATCATAACAAGAGCCACAAGCACATGGGTGATCATGAATAGACAAACAAGAAGACTTTCCAAGATCCCTGAAGAGGTGAAGCAAGAGCTTGTTCCTTTTTACCTAAACAGGCTTGCCGTTCCTACCGAAGAAGTAGATTGTGAGAAGATAGACAAACTCACTGATGACACAGCTGAGAGAATCCGATCTGGATTGGCTCCAAGATGGAACGACATGGACGCTAACCAGCATGTCAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCGATTGAAGTTCTAGAACATTATAATATGACAAGCATGACTTTGGAGTATCGACGTGAATGTACACAGTCAAATATTGTGGAATCCATGACATGTCCAACAGCAAGTGTTTTAGAGTCCAACAATAATTCCAAGAACAGAAAACCGGACCTTCAATACACACACTTGCTTCGTCTGCAACATGATAAAGCAGACGTTGTTCGAGCCAGAACTGAGTGGAATTTCAAGCAAAACCAACAGTGA 1134 0.4233 MAAISSIRLQFPRNLNDSRKRNTSFHAPCNITNVFNNKRTFLSVTASCSDNPRKMDTASRVNVNGIHVAEAPLQAGRLAKESAADEAIVTSLRGRFVEDKFVFRQIFVIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGEGFGATREMSLRKLIWVVTRIQLQVQKYNKWGDEIEVDTWVDAAGKNGMRRDWIIRDHYTKEIITRATSTWVIMNRQTRRLSKIPEEVKQELVPFYLNRLAVPTEEVDCEKIDKLTDDTAERIRSGLAPRWNDMDANQHVNNVKYIGWILESVPIEVLEHYNMTSMTLEYRRECTQSNIVESMTCPTASVLESNNNSKNRKPDLQYTHLLRLQHDKADVVRARTEWNFKQNQQ* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0647 377 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 258 370 IPR029069 -
Vra5g0647 377 CDD 4HBT 103 219 - -
Vra5g0647 377 Pfam Acyl-ACP thioesterase 102 371 IPR002864 GO:0006633|GO:0016790
Vra5g0647 377 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 28 376 IPR045023 GO:0006633|GO:0016297
Vra5g0647 377 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 28 376 - -
Vra5g0647 377 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 97 244 IPR029069 -
Vra5g0647 377 Gene3D Hotdog Thioesterase 94 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0647 Vra-Chr5 10038818 10041338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0647 94 373 Acyl Lipid Metabolism Gene Families AT1G08510 56.786 4.16e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0647 K10781 - gmx:100814191 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0647 5 10038818 10041338 Vra5g0647 5 10038818 10041338 ECH