Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0639 ATGAAGAGAAAGAGAGGAGGCGAGGAGGAGGGCATGGATATCGTGTGGCAGACTCCAGCGAATCCCCCGCACCCGCACGATTACGTCTTTCGAAACGGAATACGATTCGTTAGACCATACTACTTTGAATTCATCGCTCATGTTAAAAATCGGTGGGCGGGGAAAACCATTGTAGACTTATTTGCTGAGGAGTTTAAAGGTCGGCCTTATGATTATTATGTACACCCATGCGGTCAATATCGGAAGAACACTGTTGTTGGCATTCTTCAAGCTGAGCATGGCCTGGCACCTCTATTTCCTATTCATCGTCTGGATCGCCTTGTCTCAGGGCTTCTTATTTTGGCGAGAAATGCTGCAAAAGCTGACATCTTTAGGCAACAGATAGAAGCTGGTTTAGTCCACAAACAGTATATAGCAAAAGTAGTTGGAGAATTTCCTGAGAATGAGCTAATTGTTGATGCCAATATTGACTATAATGCACGTGAAGGAAGGAGCACAGCGGAGGTCAGAGACTCCCCAAAGGGGAAGGCTGCCTCTACAAAGTTTACTCGGATTAGTACTAATGGAACTCAAAGTATTGTTTTATGTGAACCTATCACTGGCCGTACTCATCAGATACGTGTTCATTTACAGTATTCAGGGCACCCGATAGCCAATGACATGCTGTACCTCTCAGAACAAACTGTTGATCGATCTGTCAAAGGGTGGAGTGCTGATAGATCAGCTCGCATATCTAATGTTTCTCTGACATCAGATCTTGATGAAGTGCTCAATGCATGCGAAGAAAATTCCAATGAAGATTTTAGCATTGATCCCATGTGTACAAATTGTCCAAATTTGGCACCCAAAGGCTCTTATAATTGCAGATATGATGGTGATGAAGATGCTCTATGGCTACATTGTATTCGCTACACGGGGCCTGGATGGACATACGAGTGTCCATATCCTGATTGGGCTAAACTTGTCTAG 969 0.4407 MKRKRGGEEEGMDIVWQTPANPPHPHDYVFRNGIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYDYYVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARNAAKADIFRQQIEAGLVHKQYIAKVVGEFPENELIVDANIDYNAREGRSTAEVRDSPKGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYLSEQTVDRSVKGWSADRSARISNVSLTSDLDEVLNACEENSNEDFSIDPMCTNCPNLAPKGSYNCRYDGDEDALWLHCIRYTGPGWTYECPYPDWAKLV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0639 322 PANTHER PSEUDOURIDINE SYNTHASE 74 321 - -
Vra5g0639 322 PANTHER PSEUDOURIDINE SYNTHASE 13 74 - -
Vra5g0639 322 ProSitePatterns Rlu family of pseudouridine synthase signature. 101 115 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g0639 322 Gene3D Pseudouridine synthase 67 258 - -
Vra5g0639 322 CDD PseudoU_synth_ScRIB2 74 320 - -
Vra5g0639 322 SUPERFAMILY Pseudouridine synthase 69 319 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g0639 322 Pfam RNA pseudouridylate synthase 69 211 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g0639 322 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 13 74 - -
Vra5g0639 322 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 74 321 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0639 K15454 - egr:104448796 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0639 5 9863754 9882188 Vra5g0639 5 9863754 9882188 ECH