Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0604 ATGCTGCACAACAAGTCCTTTGTCAAGAAAACCAGGGCAGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGCGACGACATATACTGCGGTGCACCGTTTTGCACCGTTTGCGATACTTCGGGTGCTCGCCTCAACGCTTCTCCTTCCACCATCATTCTCGTCGTGGACACCAATGTCGTGCTCCACCAGATTGATTTGCTGGAGAATCAGGCATTCGATAACATTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAAAACAAGAATATGGCTGTATACAACCGTATAAGAGCTCTCTGTAGCAATGCCACGAAGAAGTTCTATGTTTTTTCCAATGAGTACCACAGGGATACATATGTTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAACCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAGAGAGAACAAAAGGAAGGCTAGTGAAGAGGGCATTTTTGCTGAAACAGTTGAGTCTTACGTCAAGTCTTTAGACCAACCTGATCTACTTGATCTTCTTGTGCGGCCTGCATCAGAAGATGTGAATATGGAAGACGTCGAAGATCTTAGACCATCCAAGAGGAAAGTGATCTATTCAGAGCATAAGCCAATGTCAGAAATCACTTCTGGTTTGCATCGTGGAATATATTATCAAGGGAAGCTTCGTGTAAACCGTTACAATCCATTTGAAGCATATGTTGGGAGGGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGGTCAAACATGAACCGAGCTTTTGATGGAGATATTGTGGCAGCTGAACTTCTGCCGCAGGACCAGTGGCAAGAAGTCTCATCTCTATCTATAGCCGGTGAAGAAGATGAGAACGAGGATGAAGATGTTCATCTAGCTCCTAATAGTGCTGATGTTGCACCTAGGACTACTACTCAGCAGGGTTCTTCTGGACAAGTAAATGCTGTACCCACCAATCGTCCTTCTGGTCGCATTGTTGGTATTATAAAGAGGAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTTTGCCTGCAGGGAGTGGTGGAATTGCCCATGCCTTGTTTGTCTCCAAAGACCGCAGAATTCCCAAGATTCGAATCCAAACACGCCAACTTGATAACCTTTTGGATAAGAGGATTATTGTTGCAGTTGATTCTTGGGATCGTCAGTCTAGATATCCATCTGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGTGAGGTGGTTTTGATAGAAAATGATATAAATACTCGACCATTCTCTTCGCAAGTGCTGGCATGCTTGCCACCATTACCATGGTTGGTCTCTTCTGAAGATTTGTCCAATCCTATAAGGCAGGACTTGCGTCATCTACTTGTGTTCAGTGTCGATCCTCCAGGTTGCAAGGATATTGATGATGCACTCCATTGCCATGCACTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTTACAAATTTTGTTCACCCTGGTACTCCACTTGATGATGAGGCTTCCCAGAGGGGTACATCTGTCTACCTTGTGGAGCGGCGTATAGACATGCTTCCCAAACCTCTAACGGAGGACATATGTTCACTTCGTTCTGATGTGGAAAGGCTCGCATTCTCTGTCATTTGGGAAATGACACCTGAAGCGGACGTAATTTCCACCAGATATACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTGGAAGCACAAGCAAGGATGGATGATAGTCGTCTGAGGGACCCCATTACTACAGGTTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGGCTGAGGCGCATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGATACAGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTTCGTTATGCTCATTATTAAGGCGTCATCCAACACCAACCAGAGAGATGCTTGAACCCTTATTACAGACGGCTGCTGCAGTTGGCTTGCACTTGGATGTTTCATCATCAAAAGCATTGGCTGATTCTCTTGACCATGCAGTGGGCGATGATCCATACTTCAATAAATTAATCCGTATACTGGCAACTAGGTGCATGAGTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCGGAATATCATCATTATGGGCTTGCAGCTCCTTTATACACCCATTTCACATCACCTATTAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCAAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCAGTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGCATGCAGGGCGAGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAATAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGCTTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTATATACTTGACAAAAGCCGGAAAGGGAAATGGAGAATGGTATGTAGATGAGCAACAGCAGAAAATAAAAAGGATGGATGGTAGCCTTTCATACAGCGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAACCTAATCGTCCGAAACTTCAGCTTACTCTCATCTAG 2811 0.4358 MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLNASPSTIILVVDTNVVLHQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRIRALCSNATKKFYVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKASEEGIFAETVESYVKSLDQPDLLDLLVRPASEDVNMEDVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYYQGKLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWQEVSSLSIAGEEDENEDEDVHLAPNSADVAPRTTTQQGSSGQVNAVPTNRPSGRIVGIIKRNWHSYCGSLEPMPLPAGSGGIAHALFVSKDRRIPKIRIQTRQLDNLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADVISTRYTKSVIKSSAALSYVEAQARMDDSRLRDPITTGLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLSSIADNLNYRHRNAQHAGRASVELHTLIYFRNRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKAGKGNGEWYVDEQQQKIKRMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0604 936 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 936 - -
Vra5g0604 936 SUPERFAMILY Nucleic acid-binding proteins 431 849 IPR012340 -
Vra5g0604 936 SUPERFAMILY Nucleic acid-binding proteins 853 932 IPR012340 -
Vra5g0604 936 SMART PIN_9 53 166 IPR002716 -
Vra5g0604 936 PANTHER RIBONUCLEASE 3 936 - -
Vra5g0604 936 CDD PIN_Rrp44-like 9 181 - -
Vra5g0604 936 Pfam Dis3-like cold-shock domain 2 (CSD2) 375 442 IPR041505 -
Vra5g0604 936 Pfam S1 domain 854 922 IPR033770 -
Vra5g0604 936 Gene3D - 853 936 IPR012340 -
Vra5g0604 936 Gene3D - 9 193 - -
Vra5g0604 936 ProSitePatterns Ribonuclease II family signature. 771 795 IPR022966 -
Vra5g0604 936 SMART RNB_2 473 804 IPR001900 GO:0003723|GO:0004540
Vra5g0604 936 SUPERFAMILY Nucleic acid-binding proteins 216 425 IPR012340 -
Vra5g0604 936 Pfam Rrp44-like cold shock domain 220 311 IPR033771 -
Vra5g0604 936 Pfam RNB domain 473 802 IPR001900 GO:0003723|GO:0004540
Vra5g0604 936 Gene3D - 353 428 - -
Vra5g0604 936 SUPERFAMILY PIN domain-like 54 187 IPR029060 -
Vra5g0604 936 Gene3D - 208 313 - -
Vra5g0604 936 Pfam PIN domain 55 178 IPR002716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0604 Vra-Chr5 8909187 8931138 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0604 K12585 - gmx:100806652 1746.1