Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0599 ATGGCGAAGCAGAAACTCGGATACACTTTTTTGGTGTACTTGGTCATTCAATTCTTCTTTGCTTCCTCTGTTTCGGCTTCAGCGAGAGTTGCGCCTCTTTTGCAGAGCTATGGGAACCCAATTTTCGGATCAAACTTTCATTCTATTTACGACACTTCCATGTACGGAGTGTTTCAGCTGAGTAATGGATTGGCTAAAACGCCTCAGATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAGTGAAAGGGTCATTAAGGAAACGGCTGATGCACTGGTATCAACCGGATTGGCTGATTTAGGTTATGTATATGTCAACATAGATGATTGCTGGTCTGCTGTGACAAGAAATCTGAAGGGTCAACTTGTTCCTGATCCTAAGACATTTCCATCTGGAATCAAAGCTCTTGCAGATTATGTACATGGAAAGGGACTCAAGCTTGGCATATATTCAGATGCTGGGGCTTTTACATGTCAAGTCCGGCCAGGATCGATTTTCCATGAAACTGATGATGCAGATTTATTTGCCTCTTGGGGTGTAGACTATTTGAAGTATGACAACTGTTACAATCTGGGTATCCCTCCAAAAGAACGTTATCCTCCTATGCGTGATGCTCTCAATGCAACTGGACGCAAAATTTTCTACTCACTGTGTGAATGGGGCGTTGATAACCCTGCCTTGTGGGCAGACAAGGTAGGTAACAGCTGGCGCACAACTGATGATATCAGTGATTCGTGGGCAAGCATGACAACCATTGCCGATCTTAATGATAAGTGGGCTGCATATGCTGGTCCCGGGGGATGGAATGATCCAGATATGTTGGAAGTTGGAAATGGTGGAATGACTTACCAGGAATACCGTGCTCACTTCAGCATCTGGGCTTTAGCGAAGGCACCACTATTGATCGGCTGTGATGTAAGAAATTTGACTGCTGAAACACTTGAGATTTTAAGCAATGCAGAAGTCATTGCCATAAATCAAGACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAGCTTCTGATGTAGATGGTTGCAGACAGGTTTGGGCCGGTCCTTTATCAGGAAATCGATTGGCTGTTGCTTTCTGGAATCGATGCTCAAAAGTTGCCACTATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGAATTCGTGTTTCTGTGAGGGATCTGTGGCAGCACAAGTTAGTAGCTGAAGATGCAGTGTCATCGTTCAGTGCTGGAGTTGATATCCACGACTGTCAACTGTACATTTTCACTCCATTTACAGTATCTCACTCTGTAGAGTAA 1299 0.4434 MAKQKLGYTFLVYLVIQFFFASSVSASARVAPLLQSYGNPIFGSNFHSIYDTSMYGVFQLSNGLAKTPQMGWNSWNFFACNISERVIKETADALVSTGLADLGYVYVNIDDCWSAVTRNLKGQLVPDPKTFPSGIKALADYVHGKGLKLGIYSDAGAFTCQVRPGSIFHETDDADLFASWGVDYLKYDNCYNLGIPPKERYPPMRDALNATGRKIFYSLCEWGVDNPALWADKVGNSWRTTDDISDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLIGCDVRNLTAETLEILSNAEVIAINQDSLGVQGRKVQASDVDGCRQVWAGPLSGNRLAVAFWNRCSKVATITASWEALGLESGIRVSVRDLWQHKLVAEDAVSSFSAGVDIHDCQLYIFTPFTVSHSVE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0599 432 Pfam Alpha galactosidase C-terminal beta sandwich domain 346 421 IPR041233 -
Vra5g0599 432 Gene3D Aldolase class I 60 332 IPR013785 -
Vra5g0599 432 SUPERFAMILY Glycosyl hydrolase domain 332 424 - -
Vra5g0599 432 ProSitePatterns Alpha-galactosidase signature. 103 119 IPR000111 GO:0004553|GO:0005975
Vra5g0599 432 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 45 423 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 CDD GH27 68 330 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 Pfam Alpha galactosidase A 67 330 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 62 81 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 98 113 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 139 160 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 173 190 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 200 218 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 265 284 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PRINTS Glycosyl hydrolase family 27 signature 286 307 IPR002241 GO:0004553|GO:0005975
Vra5g0599 432 PANTHER ALPHA-GALACTOSIDASE 3 45 423 - -
Vra5g0599 432 Gene3D - 333 425 IPR013780 -
Vra5g0599 432 SUPERFAMILY (Trans)glycosidases 60 330 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0599 Vra-Chr5 8718671 8725929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0599 1 430 Glycoside Hydrolase AT3G56310 71.528 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0599 K07407 - gmx:100784072 803.897