Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0591 ATGGGAAACTGCTTCTCCGAAGTCACCGCAGGCCGCGCTGCCATCGGCGGCACCGCCGGCGATTTCCGTAGTCTTGCTGGCGCTCCAAACGACGCCGTCGAGAACTTCCTCAGGTCTCGCGGCCACCACGGTCTCTTTTCTCAGATCGAGTTGTCGTTTTCAGCTTCTGGCTTGGGTGATCGTGATGTGCTTTTCAAGAATAATCCGATGATGGTTCTTTATGCAAAAGGCAAAACTGGAGCACTTGAGGAAATTTGCCGTACTGAAGTTGTTCTGAATTCATCAAGTCCAACATGGATTGCTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGACACTCGGTTTCACAATTTAGATATAAAGATGCTTGAGCTAGATGAGCAGCAATTTCTTGGTGAGGCTACATGTGTACTGTCTCAGATAATCACACAGCGTGATCAATCATTGACTATAGATCTACACACAGAAGATTCTTTGAGATCTACACTGCCCAAAAATTGCGGGAAGCTCCTGGTGCATGCTGAGGAGTGTGTTAGCTCAAAGACTGCAATAGAGATGGCGTTCAGGTGTTCAGATTTGGAATGCAAGGATCTCTTCTCAAGAAATGACCCCTTTTTATTGATATCAAAAGTTGCAGAAGGTGGTGTCCAAATTCCAATTTGCAAAACAGAAGTTATTAAGAATGACCTTAATCCAATATGGAAATCTGTGTTTGTGAATATCCAACAAGTAGGAAGCAAGGAGAGTATTTTGATAATTGAGTGCTATAACTATAATAGCAATGGAAAACATGATTTAATTGGTAAAGTGCAGAGATCTCTGGCTGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTATTTTTGCCATCTTCTGGTGGACAAAACCATGACAATAAGGTGTTAAGGAGCCAACTATTTGTGGACAGATTTATTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCTGGGGGTTTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCGAATGGAAATCCACGCCTTCCTGATTCTTTGCATTATATTGATCCTTCTGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGGGCACGACCAATTGATGGTCCTGTTTCACATTGCTTCAACTTGAATGGAAGTAGTCATTATTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCATAATGTATCTCTTGCAGGACCTACTCTTTTTGGACCTGTCATAAGCACAGCTGCACTGATTGCCAGCCAATCGGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATAATCACAGATGGAGTAGTGACAGATCTTCAAGAAACAAAAGATGCCATTGTTAAAGCATCTGATCTGCCTTTATCAATCCTCATTGTTGGGGTTGGAGGTGCTGATTTCAAAGAAATGGAGGTTTTAGATGCAGACAAGGGAGAGAGGCTTGAGAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGGTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTTGCAGAATTACCGACTCAATTTTTAACTTATGTGCGGAGCAGAGATATCCAACCAAACCTCTAG 1737 0.4208 MGNCFSEVTAGRAAIGGTAGDFRSLAGAPNDAVENFLRSRGHHGLFSQIELSFSASGLGDRDVLFKNNPMMVLYAKGKTGALEEICRTEVVLNSSSPTWIAKHTLIYHFEVVQVLVFRVYDVDTRFHNLDIKMLELDEQQFLGEATCVLSQIITQRDQSLTIDLHTEDSLRSTLPKNCGKLLVHAEECVSSKTAIEMAFRCSDLECKDLFSRNDPFLLISKVAEGGVQIPICKTEVIKNDLNPIWKSVFVNIQQVGSKESILIIECYNYNSNGKHDLIGKVQRSLAELENIHNNGQGENLFLPSSGGQNHDNKVLRSQLFVDRFIESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALHNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGFSVVQALLAELPTQFLTYVRSRDIQPNL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0591 578 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 576 - -
Vra5g0591 578 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Vra5g0591 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 288 IPR035892 -
Vra5g0591 578 CDD vWA_copine_like 312 565 IPR010734 -
Vra5g0591 578 Pfam C2 domain 54 159 IPR000008 -
Vra5g0591 578 Pfam C2 domain 200 292 IPR000008 -
Vra5g0591 578 Gene3D C2 domain 52 194 IPR035892 -
Vra5g0591 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Vra5g0591 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 165 IPR035892 -
Vra5g0591 578 Pfam Copine 362 576 IPR010734 -
Vra5g0591 578 CDD C2B_Copine 195 288 IPR037768 -
Vra5g0591 578 PANTHER COPINE 1 576 IPR045052 GO:0005544
Vra5g0591 578 CDD C2A_Copine 47 172 - -
Vra5g0591 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Vra5g0591 578 SMART VWA_4 341 538 IPR002035 -
Vra5g0591 578 SMART C2_3c 198 297 IPR000008 -
Vra5g0591 578 SMART C2_3c 48 161 IPR000008 -
Vra5g0591 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Vra5g0591 578 Gene3D C2 domain 195 312 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0591 Vra-Chr5 8102265 8110212 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0591 - - gmx:100799074 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0591 5 8102265 8110212 Vra5g0591 5 8102265 8110212 ECH