Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0566 ATGAGTGCTCCCATGGACACAGAGCTCACAACCTACGAAAATGGCGCTGGTTCCCAACACTCACTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAGCCCTAAAACCTTCCAGCACCGCTAAAATCGAAGATGTTCGTTCCGCCGTTGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGCAGATAACGTGCAAAGAATTGTCATTTGCGGATGTGATACCGATGAAGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAACGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGAGTTGACCCATTCCTTGTTTCGTGGAACCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTTGAAAGCCTCGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTAGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTGAAATCATCTCCTAATGTGATAATTCTAACAACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGGATCTTGGCTAATTTACAGGATTGCGAGAATATCATGCTTCCACATTACGCATGTGCAAAGGAGAGGTTGAACGCTCCAGATTCGCACGAGGGTTCTACATTCATGCAACTGTGCAAGCACCTATTGGATACAGCGGAGGCCTGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAACTTCCATTTTTGGCACATGCTTCACTCTCAAATCCTTTTGATTGCAACCATATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGATTAA 1341 0.4303 MSAPMDTELTTYENGAGSQHSLPEDKVLVPVEVALKPSSTAKIEDVRSAVEGMLEKRSLSYIDGPIPVPLDEAFLADNVQRIVICGCDTDEGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILANLQDCENIMLPHYACAKERLNAPDSHEGSTFMQLCKHLLDTAEACEGMSGRSLRKLPFLAHASLSNPFDCNHIKFLCTMVETAKRERSELPD* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0566 446 Gene3D - 123 347 IPR027417 -
Vra5g0566 446 SMART AAA_5 180 332 IPR003593 -
Vra5g0566 446 ProSitePatterns AAA-protein family signature. 302 321 IPR003960 GO:0005524|GO:0016887
Vra5g0566 446 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 20 443 IPR044539 -
Vra5g0566 446 Pfam ATPase family associated with various cellular activities (AAA) 184 329 IPR003959 GO:0005524|GO:0016887
Vra5g0566 446 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g0566 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Vra5g0566 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Vra5g0566 446 MobiDBLite consensus disorder prediction 1 18 - -
Vra5g0566 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 410 IPR027417 -
Vra5g0566 446 CDD AAA 182 330 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0566 184 366 Calmodulin-binding Proteins AT3G56690 29.730 1.16e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0566 K22399 - gmx:100812167 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0566 5 7365103 7370121 Vra5g0566 5 7365103 7370121 ECH