Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0560 ATGGATCCAAACCCTCGAACCTTTCCCATCCTCTCCTATGTCATCTCGCGCCTCCCTTCTCTCACTCCCAGACCACCCGCCGCCGACGCCAACTCCCACTCCGACCACTTCGACCTCGAGCAGCCGCGGGCCCCGGAGATCGTCGGCCAAATGCCGCACCTCGCCGACCCGGACCTCATGGCCTCCATGGGCCGGGCCGTATCTCAGGTGGTCCAGGCCCGAACGGTCCTGAACCTCATCGGGGAGCGGCCCACGCACGAGGAAGTCGACAGCGCCAGGGCCAGGCTGGCGGAGATCGAGGCCCAGCTGTCCCACGAACTGGAGGAGATCGTGCTCCAGGCCCGGCCCCCGGAGATGGAGATTCACGGGTGGCGGGCCCACCAGGCCGAGAAGGAGAGGGAGTGCCGGGAGCGGGCGGAGACGGAGAAGCGAATCTGGAAATCGGTGCTGCAGTTGGACGAGATGCACGAGGCGTACGAGAAGCTTCTGAAGGACGCGGAGAAGCGGTTGGTGAAAATGTACGAGTCGAAGGAAGATGGTGATGGCGATGTTGTTGGCGACGAAGTGAATGAAGAGGTTGTGGGAATTCTTCAAGAGGCCTATGGCAAGGGAATGGAACGCGTCAATCTTTCTGGACGCCAATTGAAACTCTTGCCTGAGGCATTTGGTCGAATTCCTGGCTTGCTCGTCTTTGATCTTTCTGCCAATCAACTCTCGGCTATTCCTGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTTTCTTCAAATCTTTTGGAGTCTCTGCCGGATTCAATTGGGTTATTACAAAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGTCTGCGCTTCCTGATACCATCTGTCACTGCAGGTCATTGGTTGAGTTGGATGTAAGCTTTAACAATCTATCATATTTGCCAACAAACATCGGATATGAATTACCGAACTTGCAGAAACTCCTGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCGATCTGTGAGTTGAAGTCCTTGCGCTATTTAGATGCTCATTTTAATGAGCTGCATGGGCTTCCCATTGCAATCGGGAGACTGACTAATCTTGAGGTTCTCAACCTGAGCAGTAACTTTAGTGACCTCAAAGAACTACCAGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATCCATGCACTTCCTGATACATTTGGGCGGCTTGATAATTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGTGTTGAAGCCGTAAAGAGCTTTATGGCGAAGAGGTGGCTTGATATATTGTTGGAGGAGGAGAGGAAAAACAGCCAAGAAATGCAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCTTGGTTGAAGAATGTTTCTGGAAACGTAATTGGGTATATTGGAACTGCCGGTGGAACTCCCAGAGATGCATATCTTGATCAGCAGCTATGA 1521 0.5102 MDPNPRTFPILSYVISRLPSLTPRPPAADANSHSDHFDLEQPRAPEIVGQMPHLADPDLMASMGRAVSQVVQARTVLNLIGERPTHEEVDSARARLAEIEAQLSHELEEIVLQARPPEMEIHGWRAHQAEKERECRERAETEKRIWKSVLQLDEMHEAYEKLLKDAEKRLVKMYESKEDGDGDVVGDEVNEEVVGILQEAYGKGMERVNLSGRQLKLLPEAFGRIPGLLVFDLSANQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLSALPDTICHCRSLVELDVSFNNLSYLPTNIGYELPNLQKLLIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAVKSFMAKRWLDILLEEERKNSQEMQEQEQGGWLTRSTSWLKNVSGNVIGYIGTAGGTPRDAYLDQQL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0560 506 Coils Coil 89 109 - -
Vra5g0560 506 Coils Coil 149 176 - -
Vra5g0560 506 Gene3D Ribonuclease Inhibitor 327 445 IPR032675 -
Vra5g0560 506 ProSiteProfiles Leucine-rich repeat profile. 391 412 IPR001611 GO:0005515
Vra5g0560 506 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 494 - -
Vra5g0560 506 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Vra5g0560 506 Pfam Leucine rich repeat 250 307 IPR001611 GO:0005515
Vra5g0560 506 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 494 - -
Vra5g0560 506 PRINTS Leucine-rich repeat signature 251 264 - -
Vra5g0560 506 PRINTS Leucine-rich repeat signature 389 402 - -
Vra5g0560 506 SUPERFAMILY L domain-like 203 430 - -
Vra5g0560 506 SMART LRR_typ_2 389 412 IPR003591 -
Vra5g0560 506 SMART LRR_typ_2 248 270 IPR003591 -
Vra5g0560 506 SMART LRR_typ_2 318 341 IPR003591 -
Vra5g0560 506 SMART LRR_typ_2 225 247 IPR003591 -
Vra5g0560 506 SMART LRR_typ_2 295 317 IPR003591 -
Vra5g0560 506 SMART LRR_typ_2 364 388 IPR003591 -
Vra5g0560 506 SMART LRR_typ_2 271 294 IPR003591 -
Vra5g0560 506 ProSiteProfiles Leucine-rich repeat profile. 250 271 IPR001611 GO:0005515
Vra5g0560 506 Gene3D Ribonuclease Inhibitor 101 324 IPR032675 -
Vra5g0560 506 SMART LRR_bac_2 389 408 - -
Vra5g0560 506 SMART LRR_bac_2 341 360 - -
Vra5g0560 506 SMART LRR_bac_2 248 267 - -
Vra5g0560 506 SMART LRR_bac_2 271 290 - -
Vra5g0560 506 SMART LRR_bac_2 294 313 - -
Vra5g0560 506 SMART LRR_bac_2 318 337 - -
Vra5g0560 506 SMART LRR_bac_2 364 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0560 Vra-Chr5 7324576 7327885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0560 218 433 Receptor kinase-like Gene Family AT3G51740 33.184 1.75e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0560 - - gmx:100803823 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0560 5 7324576 7327885 Vra5g0560 5 7324576 7327885 ECH