Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0559 ATGTTGAGGCTTCACGTGTGTGTGTTGGAAGCCAAGGACCTTCCAGTGAGTGCTACGTACGTGAAGCTTAGACTCTCCAAGTTGAAGGCCAAGACAAGGATTTTGACAAACACGTGCAACCCCGTTTGGAATCAGGAGTTTTGTTTCAGGGTGCATGATGCTGAGGACGTGCTCCTTCTGTCTGTTGTTAGTCATGTGAATGGTTATGTCGGTTTCGTGGGTCAGGTTCGGATACCTGTAGGCTCAATTTCTTTTGAGCATACCTTGCAGCCCGCCTGGTTCTCTCTTCAAAGCCCCAAGAGTGGGAAATTTTTCAATAAATATTGTGGAAAAATTCTCCTTACTCTTTATCTTCGTGGTAAAGGGCGTGCTTCTTTTACCAAGCATAAGCATTCTCCAAATCCGACACTTGCAGTTGAGAACTCGAAGGAATTGGAAGGTCTTCTTCACAGTTCATGTCGGGCACCTTGTGATAAAATGGGTGTAGGCAAACTGTTGAGGGTTATTGCTAATGGTCTGCATAAGATTTTGAAAAAGAAAGAAGGAAACTCAAAGCTCGGGGATTCTTCAGAACAATCCACGTTATTATCTGATCCTGAAGTTAGTGCTCATGAAAATTCACCTACTTGTAGTTTTGAAGAAGCCCTTGCACAAATGGAATCAAGAGATAACAAACCAGAAATGCCTGGAAATTTGTCGGGCGGTGTTCTAGTAGATCAGATTTATTTATTCTCTCCATATGACCTTAATTTGTTTCTTTTTGCACCCAAGTCACAGTTTCGTAAAGATTTGGCTGAGCTGCAGGGAATAACAAATGTGCAAGAGGGACCTTGGACATGGAAAAATGGAGATATGTCAAGTTTAACACGAGTAGTTACTTGTACAAAAGCTGCAACAAAATTGGTTAAGGAAGTTGGTGCCACTGAGGAGCAAACGTACATTAGAGTGTGTAGAAAGGAATTTGCTATACTTTGTAGCATAAGTACACCTGAAGCTCCATATGGGAATACATTTAGGATTGAATTGCTTTACAAGATAATGCCTGGTGAAGAGGTACCTTCAGGAGAGGAATCCTCCCATCTTGCTGTGTCATGGGGCATTGTCTTCCTCCAAAGCACAATGATGAAAGGCGTGATAGAAAGTGGGGCAAGGCAGGGATTGAAGGAGAGTTTTAACCAGTTCTCCCAAAAACTAGCGCAGAATTTTAAGGTTCAAGATAAGGCAAATTTTTCAGACAAGGAACATTTTTTGGCAACTTTGCAAACTGAAGACCAGTGGCATTGGTGGCAGGAAGTTTCATACTTTTGTAATTTCACTGTGGTTTCCACCTTTTTCATGTGTTTGTATGTGATGGTGCATATTTTGTATTGTGGTCCAAGTCTACCTCAGGGCTTGGAATTTGGGGGGCTTGAATTGCCAGATAGTTTTGGGGAACTCATTATAGGTGGAATTTTATCCATCCAGTTGCAGCGTGTTTACAATATGCTGTCTCACTTTGTTCAAGCCAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCATGGTGTTGGATGGGTTCTTACAGTGGCTTTAATTGAGGGGGTTGACTTGGCTTCCTTGGAATCAGAAGGGGTGTCAAATCCCTATGTAGTTTTCACCTGTAATGCACAAACAAGATCAAGCTCTGTCAAGCTTCAAACGTCGAATCCTCAATGGAATGAAATATTAGAGTTTGAAGCTATGGAAGAACCACCATCAGTTTTGGATGTGGAAGTGTTTCATTTTGACGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAGCACACATCAACTGAGTTGGCAGACATGTGGCTCTTGCTCGAAGGAAAACTTGCTCAATCTTCTCAGTCAAAGTTGCACCTGAGAATTTTCTTGGACAATAATAAAGGAGTTCAGACAATCAAGGAATATTTGGGGAAGATGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTAGATCACCACAAAGGAGTTCTACATTCCAGAAATTGTTTGCATTACCTCCGGAAGAATTTCTCATAAAAGATTTAACTTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGGCTGTTTCTTTCAGCAAGGATTCTGGGTTTTTATGCCAATTTCTTTGGAAACAAAACCAAATTTTTCTTCCTTTGGGAAGACATTGAAGACATACAAGTGCTTCCTCCATCGTTGGCAACAGTAGGAAGTCCTACATTGGTAATAATCCTGAGAAGTGGTCGAGGAATTGATGCAAGGCACGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTTCTTCATTTGGTGCTGCCTGCAGAACGATAAAGGCATTGTGGAGAACAAGAATTCTGAACCCCTATCAGAAAGATCAAATTACAGAAGAACATGAAGATCAAGAAGGCTTTGTAATTCCAGAAGACTATGCATCTATCTTAGAGAATAAAGTAAACATGTCCAGAATCTTCTCTGCAGAACTACCAATCAGGATGATATCTGTGATGGGAATTTTTGCTGGAGGAACCCTGGAGCATAAAATTATGCAGAGAAAAGGATGTATGAACTATGAAACTAGCGCGTGGGAGCTCGTAAAACCTGAGGTGTTCGAGAGGCGTGTTTCTTACCAATTCAATCGACAAGTATCAACTTTTGGAGGTGAAGTCACAAGCACACAGCAAAAATCTCCAAATGCAGACACTGGAGGGTTGACTGTCGTTGAAGTTATGGCTCTTCATGGTGTCCCTTTTGCTGATCACTTTCATATTCATTTTAGGTTCGAAATTGAGCCATCATCTCTTGGTGAACGTGCTTGCAAATTTGATGCTTACATTAGTGTTATGTGGCTTAAGAGCTGCAAGTTTCAGCAGAGGATCAACAGGAACATAATATCCAAGTTTAAGCATCGACTGAAGGAAATATTTGAACTGGTTCAGGAAGAGATTTTGATCATGTCTGAGAACTCAAATGAATAA 3018 0.4109 MLRLHVCVLEAKDLPVSATYVKLRLSKLKAKTRILTNTCNPVWNQEFCFRVHDAEDVLLLSVVSHVNGYVGFVGQVRIPVGSISFEHTLQPAWFSLQSPKSGKFFNKYCGKILLTLYLRGKGRASFTKHKHSPNPTLAVENSKELEGLLHSSCRAPCDKMGVGKLLRVIANGLHKILKKKEGNSKLGDSSEQSTLLSDPEVSAHENSPTCSFEEALAQMESRDNKPEMPGNLSGGVLVDQIYLFSPYDLNLFLFAPKSQFRKDLAELQGITNVQEGPWTWKNGDMSSLTRVVTCTKAATKLVKEVGATEEQTYIRVCRKEFAILCSISTPEAPYGNTFRIELLYKIMPGEEVPSGEESSHLAVSWGIVFLQSTMMKGVIESGARQGLKESFNQFSQKLAQNFKVQDKANFSDKEHFLATLQTEDQWHWWQEVSYFCNFTVVSTFFMCLYVMVHILYCGPSLPQGLEFGGLELPDSFGELIIGGILSIQLQRVYNMLSHFVQARFQMGTDHGLKAHGVGWVLTVALIEGVDLASLESEGVSNPYVVFTCNAQTRSSSVKLQTSNPQWNEILEFEAMEEPPSVLDVEVFHFDGPFDQDVSLGHAEINFLKHTSTELADMWLLLEGKLAQSSQSKLHLRIFLDNNKGVQTIKEYLGKMEKEVGKKLNLRSPQRSSTFQKLFALPPEEFLIKDLTCYLKRKMPLQGRLFLSARILGFYANFFGNKTKFFFLWEDIEDIQVLPPSLATVGSPTLVIILRSGRGIDARHGAKTQDEEGRLRFHFQSFSSFGAACRTIKALWRTRILNPYQKDQITEEHEDQEGFVIPEDYASILENKVNMSRIFSAELPIRMISVMGIFAGGTLEHKIMQRKGCMNYETSAWELVKPEVFERRVSYQFNRQVSTFGGEVTSTQQKSPNADTGGLTVVEVMALHGVPFADHFHIHFRFEIEPSSLGERACKFDAYISVMWLKSCKFQQRINRNIISKFKHRLKEIFELVQEEILIMSENSNE* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0559 1005 Gene3D C2 domain 2 144 IPR035892 -
Vra5g0559 1005 ProSiteProfiles VASt domain profile. 233 406 IPR031968 -
Vra5g0559 1005 CDD C2 521 621 - -
Vra5g0559 1005 SMART gram2001c 672 738 IPR004182 -
Vra5g0559 1005 PANTHER BNAA05G37250D PROTEIN 2 1002 IPR044511 -
Vra5g0559 1005 ProSiteProfiles VASt domain profile. 833 996 IPR031968 -
Vra5g0559 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 128 IPR035892 -
Vra5g0559 1005 SMART C2_3c 3 92 IPR000008 -
Vra5g0559 1005 SMART C2_3c 520 619 IPR000008 -
Vra5g0559 1005 Gene3D - 670 797 IPR011993 -
Vra5g0559 1005 Pfam GRAM domain 674 751 IPR004182 -
Vra5g0559 1005 Pfam C2 domain 520 619 IPR000008 -
Vra5g0559 1005 Pfam C2 domain 3 96 IPR000008 -
Vra5g0559 1005 MobiDBLite consensus disorder prediction 182 207 - -
Vra5g0559 1005 ProSiteProfiles C2 domain profile. 1 94 IPR000008 -
Vra5g0559 1005 Gene3D C2 domain 505 639 IPR035892 -
Vra5g0559 1005 ProSiteProfiles C2 domain profile. 500 619 IPR000008 -
Vra5g0559 1005 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 519 644 IPR035892 -
Vra5g0559 1005 CDD C2 4 96 - -
Vra5g0559 1005 Pfam VAD1 Analog of StAR-related lipid transfer domain 837 979 IPR031968 -
Vra5g0559 1005 Pfam VAD1 Analog of StAR-related lipid transfer domain 237 386 IPR031968 -
Vra5g0559 1005 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 2 1002 - -
Vra5g0559 1005 MobiDBLite consensus disorder prediction 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0559 Vra-Chr5 7314371 7318006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0559 1 132 Lipid Metabolism Gene Families AT1G22610 29.861 2.52e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0559 - - vun:114162777 1840.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0559 5 7314371 7318006 Vra5g0559 5 7314371 7318006 ECH