Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0555 ATGGCCACAGCTTCGCAAAAGGCGACGCCACCACTACCGCCGCCGCCGCCGTCCTCTTCTTGCTGTCCCGCCGCCGACTCCGCCGCCATTCCCCGTGCCGCCGCCCCGCCGCAAGAGTGGAACGCCGCCACCGACGTCCCTCTCATTCGTCCCGTCGATTCCTCCACCAATGCCTCTGCTGCCAAGGGAGTCACTGCAATGCCAAGGCCCCAGTCCAGCCACCCTTTGGACCCTTTAACTTCTGCTGAAATATCAGTGGCCGTGGCAACTGTGAGGGCCGCTGGAGCTACTCCTGAGCTTAGAGATAGTATGCGCTTCATTGAAGTAGTTTTACTGGAGCCCGATAAAAATGTTGTTGCACTGGCAGATGCATATTTCTTTCCGCCTTTCCAACCATCTTTACTTCCCAGAACTAGAGGAGGACCTTTAATTCCAACTAAACTCCCTCCAAGATGTGCTAGACTTGTTGTTTACAATAAGAAATCTAACTTGACTAGTATATGGATTGTTGAGTTGTCACAAGTACATGCTGTAACTCGAGGTGGTCATCACCGAGGAAAAGTAATTTCATCACATGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAATATGCAGAATGTGAGGCTGTAGTCAAAAGTTTTCCCCCATTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGACCTTGTAATGGTCGATCCCTGGTGTGTTGGTTATTATAGTGAAGCAGATGCTCCTGGGAGAAGACTTGCTAAACCCCTCATATTTTGTCAATCTGAGAGTGACTGCCCCATGGAAAATGGCTATGCTCGCCCAGTTGAGGGCATCTATGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGATCGTAAACTTGTTCCCCTTCCACCAGTTGATCCCTTGAGGAATTATACTCCGGGTGAAACCAGAGGTGGCTCTGATAGAAGTGACGTAAAACCGTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTCAATGGGTATTTTGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGTTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCATGGGCGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTTCCGTATGGAGATCCCAACGACCCACATTATCGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAGTATTTTGATGCTCACTTCACTAATTTCACCGGTGGGGTGGAAACAATTGAAAACTGTGTATGTTTACATGAAGAGGATCACGGAATTCTCTGGAAGCATCAAGATTGGAGAACTGGCTTAGCAGAAGTCCGGAGATCTAGGAGACTTACTGCCTCTTTCATGTGTACTGTGGCTAACTATGAGTATGGATTTTTTTGGCACTTTTATCAGGATGGAAGGATTGAAGCTGAAGTCAAGCTTACTGGAATTCTTAGCCTAGGGGCCTTGCTGCCTGGAGAGTTTAGGAAATATGGAACCATGATTGCACCTGGTCTATATGCACCAGTTCATCAACACTTTTTTGTTGCTCGTATGGACATGTCTGTTGATTCTAAACCAGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAATTGAGGAACCAGGTGAGAATAATGTTCATAACAATGCTTTCTATGCTGAAGAGACTTTGCTTAGATCTGAATTGGAAGCCATGCGAGATTGTAATTCTTTGACCGCTCGACATTGGATTGTAAGGAACACTAGAACATGCAATAGAACTGGCCAGTTGACGGGATACAAGCTGGTACCTGGCTCAAACTGCTTACCATTGGCAGGTTCGGAAGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATTTTTGGGTAACAACATATTCACGTAATGAAATGTTTCCTGGAGGAGAATTTCCAAATCAAAATCCGCGTGTTGGTGAAGGACTAGCTACATGGGTTAAGCAGAACCGATCTTTGGAAGAAACTAATATAGTTCTTTGGTATGTATTTGGAATCACACATGTTCCCCGTTTGGAAGACTGGCCGGTTATGCCAGTAGAGCACATTGGTTTTATGCTCACGCCTCATGGATTCTTCAATTGTTCCCCAGCAGTAGACGTCCCACCTAATGCATGTGAAATGGATTCTAAAGATAATGACATTAAGGATAATGGTTCTTCGAAGCCAATTCAGAGTGGGTTGACGGCAAAGCTTTAG 2313 0.4522 MATASQKATPPLPPPPPSSSCCPAADSAAIPRAAAPPQEWNAATDVPLIRPVDSSTNASAAKGVTAMPRPQSSHPLDPLTSAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKNVVALADAYFFPPFQPSLLPRTRGGPLIPTKLPPRCARLVVYNKKSNLTSIWIVELSQVHAVTRGGHHRGKVISSHVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYYSEADAPGRRLAKPLIFCQSESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGETRGGSDRSDVKPLQIIQPEGPSFRVNGYFVEWQKWNFRIGFTPKEGLVIYSVAYVDGSHGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTASFMCTVANYEYGFFWHFYQDGRIEAEVKLTGILSLGALLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMSVDSKPGEALNQVVEVNMKIEEPGENNVHNNAFYAEETLLRSELEAMRDCNSLTARHWIVRNTRTCNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNFWVTTYSRNEMFPGGEFPNQNPRVGEGLATWVKQNRSLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLTPHGFFNCSPAVDVPPNACEMDSKDNDIKDNGSSKPIQSGLTAKL* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0555 770 Pfam Copper amine oxidase, N2 domain 74 158 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 SUPERFAMILY Amine oxidase N-terminal region 198 316 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 PANTHER COPPER AMINE OXIDASE 48 765 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 Pfam Copper amine oxidase, enzyme domain 328 736 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 Gene3D Copper amine oxidase, catalytic domain 315 741 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 SUPERFAMILY Amine oxidase catalytic domain 322 741 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 PANTHER AMINE OXIDASE 48 765 - -
Vra5g0555 770 MobiDBLite consensus disorder prediction 1 41 - -
Vra5g0555 770 MobiDBLite consensus disorder prediction 57 78 - -
Vra5g0555 770 Pfam Copper amine oxidase, N3 domain 199 302 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 SUPERFAMILY Amine oxidase N-terminal region 72 200 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vra5g0555 770 MobiDBLite consensus disorder prediction 746 770 - -
Vra5g0555 770 Gene3D - 56 201 - -
Vra5g0555 770 Gene3D - 203 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0555 Vra-Chr5 7232914 7240279 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0555 K00276 - gmx:100798722 1464.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0555 5 7232914 7240279 Vra5g0555 5 7232914 7240279 ECH