Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0550 ATGCTTGGGGCTGACACAAGTCCTGATGGTCACACTTATGCTTGTGTTATACGTGCGTGTGCTGACAACTTTGATTATGGTACGCTAAGGCGTGTTCATGGAGGTTTTGTGGCTACAAGATTAGGATTGGACCCTGCTTGTTGCAGCGCCCTTGTGTCTGCTTATTCAAAACTCGGCCTTGTTCATGAAGCGCGTAGAGTGTTCAATAGGATCACCGAATCAGATATAGTTTTATGGAATTCGTTGATTTCTGGCTATGGGAGCTCTGGTCTGTGGGATGTTGGGATGCAGATGTTTAGTGCGATGAAACTTGTCGGGAAGAAGCCTGATGGATATACCCTGGTTGGGTTGCTTGTGGGTGTTGTAGATTCTGGGGTGCTGAGCATTGGCCAAGGATTACATTGTTTAAGTCAAAAAAGTGGGCTTGATTCTGACTCTCATGTTAGTAGTTTGCTGGTGAGTTTGTACTCGAGATGTAAGTGCATGGATTATGCATATAGGGTCTTTTGCAGTATACTGAATCCTGATTTGGTCACATGGTCTGCTCTTATTATGGGGTATTCTCAGGCTGGGGTGTATGAGAAGGTGTTGTACCTTTTTAGGAAATTAAACATGGAAGACAGGAAGGCAGATACTGTCTTGGTTGCCAGTGTATTGGCTTCTATTGCTCGTACGACAAATGTAGGACTTGGGTGCGAGGTACATGGTTATGCTCTTCGGCATCGATTGGAACTAGATGTCAGGGTCTCCTATGCTCTAATAGATATGTACTCAAAGTGTGGTTGCTTGCAGTTGGGAATTAGTGTTTTCAGGATAATGCCAGTGCGGAATGTTGTTTCTTATAATTCTATAATTTTGGGTTTTGGCTTGCATGGATATGCTTATGAGGCTTTTAAGGTATTTGATGAGATGCTGGAGAAAGGATTGGTACCTGATGAAGCCACATTCTCTTCTCTGCTTTCTACCTGTTGTCATGCTGGCCTCGTCAAAGATGGTCGGTCAGGAGATTTTCCGGAGAATGAAGGAGGAATTTGGCATCAGAGCTAG 1047 0.4413 MLGADTSPDGHTYACVIRACADNFDYGTLRRVHGGFVATRLGLDPACCSALVSAYSKLGLVHEARRVFNRITESDIVLWNSLISGYGSSGLWDVGMQMFSAMKLVGKKPDGYTLVGLLVGVVDSGVLSIGQGLHCLSQKSGLDSDSHVSSLLVSLYSRCKCMDYAYRVFCSILNPDLVTWSALIMGYSQAGVYEKVLYLFRKLNMEDRKADTVLVASVLASIARTTNVGLGCEVHGYALRHRLELDVRVSYALIDMYSKCGCLQLGISVFRIMPVRNVVSYNSIILGFGLHGYAYEAFKVFDEMLEKGLVPDEATFSSLLSTCCHAGLVKDGRSGDFPENEGGIWHQS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0550 348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Vra5g0550 348 Gene3D Tetratricopeptide repeat domain 227 347 IPR011990 GO:0005515
Vra5g0550 348 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 333 - -
Vra5g0550 348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 74 IPR002885 -
Vra5g0550 348 PANTHER OS01G0545900 PROTEIN 1 333 - -
Vra5g0550 348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vra5g0550 348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Vra5g0550 348 Pfam PPR repeat family 276 325 IPR002885 -
Vra5g0550 348 TIGRFAM PPR: pentatricopeptide repeat domain 47 77 IPR002885 -
Vra5g0550 348 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Vra5g0550 348 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Vra5g0550 348 TIGRFAM PPR: pentatricopeptide repeat domain 178 203 IPR002885 -
Vra5g0550 348 Gene3D Tetratricopeptide repeat domain 131 226 IPR011990 GO:0005515
Vra5g0550 348 Gene3D Tetratricopeptide repeat domain 37 129 IPR011990 GO:0005515
Vra5g0550 348 Pfam PPR repeat 178 203 IPR002885 -
Vra5g0550 348 Pfam PPR repeat 48 75 IPR002885 -
Vra5g0550 348 Pfam PPR repeat 77 103 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0550 Vra-Chr5 7082498 7083544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0550 9 335 Glycoside Hydrolase AT3G49170 27.300 1.61e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0550 - - vra:106760255 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0550 5 7082498 7083544 Vra5g0550 5 7082498 7083544 ECH