Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0548 ATGAGTGGCAGCTGCGCAACCAGAAAGCAGTTCAACATACCCTTTTCTTCTCTCTTTTCTTACGCCATGCCCAAGCTTACTTTCTTCTCTTCTCGACACTTCTTGGTGTTATCCCTTGCCTTGAACGTTAGTCTCATACTCAGATTAATGCTCCACGAAGGAGAAGAACCCCACAATCATTCTTGTTTCGGATCACAAACAGCCTCATCCATTGCAAGAACCAATTCCAACATGCTTATATCATCATCCAATTCAAATACTTGCACAACCGGAGCTGGGAATAGAGTCATCAACCTCGACCATGGAGACCCGAGAGTGTATGAGAGATTTTGGCGACAAACGGGTGAGAAGAGCACGATCATAATCCCTGGGTGGCAGTCAATGAGTTATTTTTCTGATGTGACCAACATTTGCTGGTTTTTGGAGGCAGAGTTTGCAAGTGAAGTGGTGAGGTTGCACACAGTGGTTGGAAATGCTGTCACAGAAGGGAGACACATTGTGGTTGGCACAGGTTCTTCTCAGCTTTTTCTGGCTGCTCTATATGCTCTCTCCCCTACTGATGCACCCGAACCAATCAGTGTTGTCTGTGCCTCACCCTACTACTCATCGTACCCATCAATGACGAATCACCTGAAATCAGGACTGTACCAATGGGGTGGTGATGCAGCAAGTTTTGAGAAAGAGGGTCCCTACATTGAGCTGGTTACTTCTCCCAATAATCCTGATGGACATGCAAGAATATCTAAGGTCAACAGAAGCCAGGGATTTTTGGTTCATGACCTTGCTTATTACTGGCCACAGTACACTCCAATATCAGCACCTGCAGATCATGATCTTACCCTTTTCACTGTTTCAAAAAGCACTGGCCATGCTGGAATGCGCATAGGGTGGGCTCTTGTGAAAGACAAAGAGGTGGCAAAGAAAATGACAAAATTCATAGAGCTGAACACAATTGGAGTGTCTAAGGATTCTCAACTAAGGGCTGCTAAGGTTTTAAGGGCAGTTTCTGACAGCTGGGAACAAGGAAACTCCCAAGAGGGGGAGTCATTTTTCAAGTTCAGCCACAAACTCATGGCAAACAGGTGGAAACAACTGAGACTAGTGGTGGAGCATAGTGAGTTGTTCAGTTTGCCTAAATTTTCACCAGCATTCTGCACTTTTTTCAAACAGGTCTTGGAGCCTCAACCAGCTTTTGTGTGGTTAAAGTGTGAGGGAAACGTGGAAGACTGCGAAAGCTTCCTTCGAGCACACAACATCTTAACTAGAAGTGGAAAACACTTTGGTGTCAGTCCAAAATACGTAAGAATTAGCATGTTGGATACTGATGAAAATTTTAGCCACTTTCTGGAGAGACTTTCTGCCATAAAATCCTGA 1374 0.4469 MSGSCATRKQFNIPFSSLFSYAMPKLTFFSSRHFLVLSLALNVSLILRLMLHEGEEPHNHSCFGSQTASSIARTNSNMLISSSNSNTCTTGAGNRVINLDHGDPRVYERFWRQTGEKSTIIIPGWQSMSYFSDVTNICWFLEAEFASEVVRLHTVVGNAVTEGRHIVVGTGSSQLFLAALYALSPTDAPEPISVVCASPYYSSYPSMTNHLKSGLYQWGGDAASFEKEGPYIELVTSPNNPDGHARISKVNRSQGFLVHDLAYYWPQYTPISAPADHDLTLFTVSKSTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSWEQGNSQEGESFFKFSHKLMANRWKQLRLVVEHSELFSLPKFSPAFCTFFKQVLEPQPAFVWLKCEGNVEDCESFLRAHNILTRSGKHFGVSPKYVRISMLDTDENFSHFLERLSAIKS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0548 457 Gene3D - 141 340 IPR015421 GO:0003824
Vra5g0548 457 Pfam Allinase 97 455 IPR006948 GO:0016846
Vra5g0548 457 Gene3D Aspartate Aminotransferase, domain 1 341 457 IPR015422 GO:0003824
Vra5g0548 457 CDD AAT_like 144 452 - -
Vra5g0548 457 Gene3D - 57 137 IPR037029 GO:0016846
Vra5g0548 457 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 27 456 - -
Vra5g0548 457 SUPERFAMILY PLP-dependent transferases 93 454 IPR015424 -
Vra5g0548 457 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 27 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0548 Vra-Chr5 7014154 7020210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0548 K16903 - gmx:100820582 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0548 5 7014154 7020210 Vra5g0548 5 7014154 7020210 ECH