Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0546 ATGGCTCCGAGCTTAAGCAAAACAGTGCAACTAGGTTCGTTGGGTCTGCTCCCCGACAATTCACCCTTCTCCATAACCTTAAACGGCTCCAACTTCCTCGCTAACGGCCACCCTTTTCTGACGGAAGTCCCGCCCAACATAACGGCCACCCCTTCGCCCTCCGTGTATTCTAAAGCCACCGACACGGTGGTGGGTTGCTTCGTCGGGTTCCACGCGGAGGAGGCGAGGAGCCGCCACGTGGTGCCTCTGGGGAAGCTGAGGGGCATAAGGTTCATGAGTCTATTCCGGTTCAAGGTGTGGTGGACCACGCACTGGGTTGGAAGCAACGGCCACGAGGTAGAACACGAAACCCAAATGATCCTTCTCGACAAGAATGACTCGCTGGGTCGCCCCTACGTCTTGCTGCTTCCCATTCTCCAAGGCTCCTTCCGAGCCTCCCTCCAACCTGGCTTAGATGACTACGTGGACCTTTGCGTGGAGAGTGGATCTACACGTGTCACCGCCTCCAGCTTCGGGAGCTGCTTGTACCTCCACGTCGGCGATGATCCCTTTCGCTTGGTAAGTGAAGCAGCCAAAGTTGTTAGAATGCATTTGGGGACTTTCAAGCTTCTGGAGGAGAAAACCGCGCCAGCGATAATAGATAAGTTTGGATGGTGTACGTGGGACGCGTTTTATCTGAAAGTGCACCCATTAGGGGTGTGGGAAGGGGTGAAGGGCCTTGTGGAGGGAGGGTGCCCTCCGGGGATGGTCCTAATAGATGATGGGTGGCAATCAATTTGTCATGATGAGGATCCTGTGACGGACCAAGTGGGTGTGAACCGAACCTCCGCTGGGGAGCAAATGCCGTGCAGGCTCGTGAAGTTCGAGGAAAATTACAAGTTCAGGGATTATCGTAGTGTTGAAGGGTCTGAGAAAGGTTTGGGCGCGTTCGTTAGGGATTTGAAGAAGCGGTTTAGTAGCGTGGAGCAGGTGTATGTTTGGCACGCGCTCTGTGGATACTGGGGTGGGGTCAGACCTGAGGTTCCGGACATGCCCGAAGCTAAGCTTGTTACTCCGAAGCTGTCCCAGGGGTTAAAAATGACAATGGAAGATTTAGCGGTGGATAAGATCGTGAATAACGGTGTGGGACTCGTGCCACCTCACCTCGCTCACCGTTTGTACGAGGGGCTCCACTCGCGTTTGGAATCGGCGGGAATTGACGGCGTCAAAGTTGACGTTATACATCTGCTGGAAATGCTATCAGAGGAATTTGGTGGGCGTGTTGAGTTAGCCAGAGATTATTACAAAGCACTCACTGCATCGGTGAAGAAGCATTTCAAAGGCAATGGAGTCATTGCAAGCATGGAGCACTGTAATGATTTCTTTCTCCTTGGCACTGAAACCATAGCCCTTGGTCGCGTAGGGGATGATTTCTGGTGCACTGATCCCTCTGGGGATCCAAACGGAACGTATTGGCTCCAAGGGTGCCACATGGTGCATTGTGCCTACAACAGTTTATGGATGGGAAATTTTATTCACCCAGATTGGGACATGTTTCAATCTACTCACCCATGTGCTGAATTCCATGCTGCTTCCAGAGCAATCTCTGGTGGACCTATTTACGTCAGTGATTGTGTTGGAAAGCACAACTTCAAGCTGCTCAAGAGCCTCTCTTTGCCCGATGGCACCATCTTGCGTTGCCAACATTACGCACTCCCCACACGAGATTCTCTGTTTGAAGACCCTTTACACGATGGGAAAACAATGCTCAAAATTTGGAATCTCAACAAATATACAGGTGTGTTGGGTGTGTTTAACTGCCAAGGAGGAGGGTGGTGTCCGGTGACGCGGCGAAACAAGAGTGCCTCTGAATTCTCACACACTGTGACATGTTTGGCGAGTCCTGAAGATATTGAATGGAGCAATGGAAAAGTTGGAATGAGCATAAAAGGGGTGGATGTGTTTGCTGTGTATTTGTTGAAGGAGAAGAAAGTGAAGCTGATGAAATGGTCAGAGAAATTGGAAGTTTCATTGGAGCCATTTAGTTTTGAGCTGTTGACAGTGTCTCCAGTGAGAGTTTTATCAAAGGGGTTGATTAAATTTGCTCCAATTGGATTAGTGAACATGCTTAACTGTGGTGGTGCCATTGAATGTATGGAGTTTGATGATGAGAGAGATGTGGTGAAAATTGGAGTGAGAGGTTGTGGAGAGATGAGGGTGTTCTCATCGGAGAAGCCAATCAGTTGCAAAATAGATGGAGTAGCTGTCAAATTTCAGTATGAGGATAGAATGGTGAGAGTCCAAGTTCCATGGCCTACTTCTTCAAAATTCTCAATGCTTCAGTTTTTGTTTTGA 2334 0.497 MAPSLSKTVQLGSLGLLPDNSPFSITLNGSNFLANGHPFLTEVPPNITATPSPSVYSKATDTVVGCFVGFHAEEARSRHVVPLGKLRGIRFMSLFRFKVWWTTHWVGSNGHEVEHETQMILLDKNDSLGRPYVLLLPILQGSFRASLQPGLDDYVDLCVESGSTRVTASSFGSCLYLHVGDDPFRLVSEAAKVVRMHLGTFKLLEEKTAPAIIDKFGWCTWDAFYLKVHPLGVWEGVKGLVEGGCPPGMVLIDDGWQSICHDEDPVTDQVGVNRTSAGEQMPCRLVKFEENYKFRDYRSVEGSEKGLGAFVRDLKKRFSSVEQVYVWHALCGYWGGVRPEVPDMPEAKLVTPKLSQGLKMTMEDLAVDKIVNNGVGLVPPHLAHRLYEGLHSRLESAGIDGVKVDVIHLLEMLSEEFGGRVELARDYYKALTASVKKHFKGNGVIASMEHCNDFFLLGTETIALGRVGDDFWCTDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFKLLKSLSLPDGTILRCQHYALPTRDSLFEDPLHDGKTMLKIWNLNKYTGVLGVFNCQGGGWCPVTRRNKSASEFSHTVTCLASPEDIEWSNGKVGMSIKGVDVFAVYLLKEKKVKLMKWSEKLEVSLEPFSFELLTVSPVRVLSKGLIKFAPIGLVNMLNCGGAIECMEFDDERDVVKIGVRGCGEMRVFSSEKPISCKIDGVAVKFQYEDRMVRVQVPWPTSSKFSMLQFLF* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0546 777 Gene3D Aldolase class I 214 552 IPR013785 -
Vra5g0546 777 PANTHER - 1 777 IPR008811 -
Vra5g0546 777 SUPERFAMILY (Trans)glycosidases 210 561 IPR017853 -
Vra5g0546 777 Pfam Raffinose synthase or seed imbibition protein Sip1 28 760 IPR008811 -
Vra5g0546 777 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 5-RELATED 1 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0546 Vra-Chr5 6991592 6995868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0546 27 777 Glycoside Hydrolase AT5G40390 65.007 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0546 K06617 - gmx:100800308 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0546 5 6991592 6995868 Vra5g0546 5 6991592 6995868 ECH