Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0543 ATGAAGGCAACTCTAAGATACTTAGCAGGAATGGCAGGTCCTAGTGGTTTTGGCTCAAACTCAACCGCTGAACAAGTCACTGAAGATTCTTCTTGCTTCCTTCCTTCAACTCTAACAGCTCTCATCACTGGGGCAAGTTCTGGAATTGGAGCTGAAACAGCTAGAGTGTTAGTAAAGAGAGGAGTGAGAGTTGTGATCGGTGCAAGGGACTTGAAGAAGGCCATGGAAGTGAAAAAGAACATACAAAAGGAGAGTCCAAAGGCTGAGATTGTTCTGTTGGAGATTGATCTTAGCTCTTTTGGTTCTGTACAGAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCAGGGATATTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGACCACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAGATTTTATTAGAAAAAATGATAGAGACGGCAGAGAAGACAGGCATTGAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGATGCTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCCAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGCACATCCTGGCATTGTGAAGACAGGAATTATTAGAGCTCACAAGGGCTTATTAACGGATTCCCTATTTTTTATCGCATCGAAGTTACTCAAAACAACATCACAGGGTGCAGCAACTACATGTTATGTTGCTCTGAGCTCAAAAACAGAAGGGATAAGTGGAAAATACTTTGCAGATTGTAACGAGAGTAAATGTTCGAGCCTAGCAAATGACGAGTCAGAAGCACAAAAGCTATGGAACAACACCCATGCCTTTCTTCACAAACGACTACGTCAAGCAACAATTTGA 993 0.3998 MKATLRYLAGMAGPSGFGSNSTAEQVTEDSSCFLPSTLTALITGASSGIGAETARVLVKRGVRVVIGARDLKKAMEVKKNIQKESPKAEIVLLEIDLSSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEDKIETTFATNYLGHFLLTEILLEKMIETAEKTGIEGRIINVSSVIHSWVKKDAFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAAHPGIVKTGIIRAHKGLLTDSLFFIASKLLKTTSQGAATTCYVALSSKTEGISGKYFADCNESKCSSLANDESEAQKLWNNTHAFLHKRLRQATI* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0543 330 Gene3D - 31 326 - -
Vra5g0543 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Vra5g0543 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Vra5g0543 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Vra5g0543 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Vra5g0543 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Vra5g0543 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Vra5g0543 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vra5g0543 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vra5g0543 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Vra5g0543 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Vra5g0543 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Vra5g0543 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Vra5g0543 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 298 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0543 Vra-Chr5 6925159 6930046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0543 39 294 Acyl Lipid Metabolism Gene Families AT3G46170 27.612 2.14e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0543 - - gmx:100801384 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0543 5 6925159 6930046 Vra5g0543 5 6925159 6930046 ECH