Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0529 ATGGCTTACTACGATTCTGCGCCTTCTGTCCCTCTCCTATGGAACTTCTCTCAAGTACTCGGCCAACAACTTCCCAACGAGCCTCTCCAGAACGACGACATCATAACAACCATTGCTTTCGATAAGCTCGGCGATCATCTCGCCGTTGGTGATCGAGGTGGACGCGTTGTAATATTCGGTAGAGACGATCGGAAAAAGAATGTTTCGAGTAATCGAAGGGATCTGGAGCAGCGGGATTTCGCCTCGCAGCATCCCGAATTTCGTTACAAGACAGAATTTCAGAGCCACGAACCCGAGTTTGATTACCTAAAGAATGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGACCCACGACAGTTTGCAATTTATTCTTTCAACTAACGATAAAACAATTAAATTGTGGAAGGTTAAGGAGCATAAGGTGAAACAAGTTATAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCGGAAAGTAGTTTCGTACCAGGGCTGGAAACCAAGTCTGCTGCTAATGGCTATCGTTTGGAATGGATAGAGAAGATGCCTCAGAATTTTTTGCCGCCTCAGGACGTTGATAGCGAGATTGGTGGAATGGAAGACCCTTTTCGCGCAAAGCGCCAAAAGGTGTATGCTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTCTCGGCAGACGACCTTAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAACATTATTGACATGAAGCCATCAAACATGGAGGACCTTACCGAGGTCATAACATCAGCTGAATTTCATCCTTTACATTGTAACCTCCTTGCATATAGCAGCTCACAAGGTTTAATTCGTCTATCTGATTTGCGACATTCAGCAATATGTGACCATGCTTCCAGAATATTTCAACATGGAGAGAGTTATGGATCAAAGTCTTTTTTTACAGAAATCACTTCTTCTATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTATAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTAAGGAGTCATCTCCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGCTATATAATAACGACTGCATATTTGATAAATTTGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGCTCTTATAGCAATATCTTGCGGATATTCTCCCCAGGCTCTGGAAGAGAGGAAGGGATTAAACTAGAAATTAGAGGAAATTTTAATAGGAAGGCTATTCGCCAACCTAAGTCAAGGGCTAGAAGGTCTTCTCTAAGCAACATAATGCCTCGTGGAATTTACCATCACGCCCACGTTTATTCAGAGTCTAGCAGCATTGACTCTCTTTGTAATTTAAGCTCCAAGCTGCTACAAGTAGCTTGGCATCCTACATGCAATCTAGTTGCATGTGCTGTAGAAAGTAGCCTAGTCTTGTACTATGCTTAA 1518 0.4196 MAYYDSAPSVPLLWNFSQVLGQQLPNEPLQNDDIITTIAFDKLGDHLAVGDRGGRVVIFGRDDRKKNVSSNRRDLEQRDFASQHPEFRYKTEFQSHEPEFDYLKNVEIEEKINKVRWWMTHDSLQFILSTNDKTIKLWKVKEHKVKQVIEMAPPLCSENMLLAESSFVPGLETKSAANGYRLEWIEKMPQNFLPPQDVDSEIGGMEDPFRAKRQKVYAYAHSFNINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGLIRLSDLRHSAICDHASRIFQHGESYGSKSFFTEITSSISDIKFLNDGQHLISRNYMNMKLWDMRKESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNILRIFSPGSGREEGIKLEIRGNFNRKAIRQPKSRARRSSLSNIMPRGIYHHAHVYSESSSIDSLCNLSSKLLQVAWHPTCNLVACAVESSLVLYYA* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0529 505 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 9 505 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 SUPERFAMILY WD40 repeat-like 29 501 IPR036322 GO:0005515
Vra5g0529 505 PANTHER OS02G0617600 PROTEIN 9 505 - -
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 86 114 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 115 143 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 221 248 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 249 276 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 277 305 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 306 333 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 334 361 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 362 387 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 388 414 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 474 503 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 Gene3D - 60 503 IPR015943 GO:0005515
Vra5g0529 505 PIRSF PPA2_B55 5 505 IPR000009 GO:0000159|GO:0019888
Vra5g0529 505 SMART WD40_4 361 415 IPR001680 GO:0005515
Vra5g0529 505 SMART WD40_4 22 60 IPR001680 GO:0005515
Vra5g0529 505 SMART WD40_4 212 249 IPR001680 GO:0005515
Vra5g0529 505 SMART WD40_4 319 357 IPR001680 GO:0005515
Vra5g0529 505 SMART WD40_4 253 300 IPR001680 GO:0005515
Vra5g0529 505 SMART WD40_4 99 139 IPR001680 GO:0005515
Vra5g0529 505 SMART WD40_4 466 504 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0529 Vra-Chr5 6649024 6663028 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0529 K04354 - gmx:100795137 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0529 5 6649024 6663028 Vra5g0529 5 6649024 6663028 ECH