LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0523	ATGAATGTGCGCGGCGAACTCAGTTCTCCGGATCCGTTGGATTCGTTTCCTCCCTTGCGGGTTCGGGAATCGGACGGTGCCTCGGATGATTCCGAGTTCGAGCGGTATTGCAGCGCCAACTCGGTTATGGGAACGCCCAGCACCAGCATGAGCATGTGCAGCGCTGTCACGCTCTTTAACGATTTCTCCGATTGCGATTTCGCCTCTTCGGCGGAGGGTTTCGAGAGTTTCAGTTTGGGAAAGGGAACGACGGAGGCTAATTGCGCCGGCAACCGGCGACGGAGTCTGCGGTACGGTTCCAGTGGATTGGAGCTGTACGGTGATTGCAGTGAGGAGCTCGCTTTGACTGCGCTCGATTCCTCGGAGTTGGTTGGGTTTAACCGGATCGAAGAGCCGAATGGGAACGGTGAAGTGAGTGCTGGAGAAGGTGGTGTTAATGGTTTTGAATTTCAAATTGATAAAAGAGAAGAGGAAGAAGAAGGAGAAGAATTGGAAGAGTTATCGGAGGGTGATGATTCTATGTATAATTATGACAGTGATGGTAATGGTGACGGTGGAAAGGAAATTTATTTGACGGAAAACATGGGTTATTCTGAAGAGAGGGAAGTGAGAAACGAGAACTCTTTGTTTATGAACACTTCCGTGGCCTATGGTTCGCGAGACTTGGATGATTTTTTGATTCAAAACGGTCCCGTTTCTGTCATGTCTGATCTATTTCACAGTCAGCGAAAAAAGAATGATACATTGAATCCGGGTTCTGGTCAAAAGGAGCAAGGGAAAAATGTAAAGGACATGGTTATAGTCAATGAAGTTGAAGAAACTAAAGATATAGGTTATTCTGATGCCGTAGATGATGCCGTAGAAAAGGTTAGGGACAGGGAAGTTGTTATGCCTGCTTCCTTGGAGGAAAGTTCTGCACCAATCAATTCTCCGAGCAGTGTCAAGATGCCGATCCTAGGTTCTGGTGATTTGGTTAGTTGTCCTGAAGTTTCTTCTGTTACCGAGGTGGATGAAGTTCATTTGGATCTTCCGGAAAAAGAAGCTCCTCGGAATATGGGTTTGGGTGTTAATGGTTGTGGTAGCATGGAGAAAGGAAATGTCAACAGTGAAGAAGCTATTGCAGGTAGTGATGCTCCTGGTGTAAAGTCGGAGCTGGATGATTCTATGTTCAGGCTTGATCACATCAATGATGATAGCCAATTTCATAAGAGTTCTTCCAATCCATCCAGCCATCTTGAGAACGTTATTGCAAAATCATTTGAGTGTGTTGAACCAATTGCGCAGCTGTCAGACAGTGGAATGAGGAAAACATTAGAGAGTTCACCCACTTCAACAAATCTCTTAGAGAAAAGTCCTGTGGTGTCTAAGACAGAAGACTTTGAGCTAAATGAATTTTATGACGAGGTTGTTCAGGAAATGGAAGAAATTTTACTCGAATCTATGGATTCTCCTGGTTCTAGGCTTCCCATGGGTAACAGATTGGTTGAGCCTCAATTTTCTATGCCTTCAAGAGATGGTGGGTTGACTGCTTCTACTTCTAGCACAGATGATGCTTACCTGCTAGTTCAACACCCGAGAAGAATAGATAGGATTGAAGTGGTAGGTGCGAGGCAGAAGAAAGGGGATGTTTCTTTTAGTGAAAGATTGGTTGGAGTGAAGGAATACACTGTGTATATAATTAAAGTGTGGAGTGGCAAGGACCAGTGGGAGGTTGAAAGGCGATATCGTGATTTCTTCACTCTTTATCGTTGCATGAAAACATTATCCAATGAGCAAGGCTGGAAATTACCTTTGCCATGGTCTTCTGTTGAAAAGGAAACCCAGATATTTAGAAGTGCATCTCCTGATATTATTGTGAAAAGAAGTGTTCTTATTCAAGAGTGTTTACAGTCTATTATCCATTCCAGGTTCTCTCCTCCTAGAGCATTGACATGGTTTTTGTCCCATCAAGATTCGTATTCTATTTCACCTGTGTCAAATGTACCAGCTTCTCAGTCTTCTTTTACAGGATGGCAAAATTTTCGAAACATTTCCAATTTAGGGAAGACAATTTCACTCATTGTTGATATTCCACCAAACAAATCTATCAAACAGTTGTTGGAAGCACAGCATCACACCTGTGCTGGATGCCATAAACATTTTGATAATGGAAGAACTTTGATTTGGGATTTTGTACAAACATTTGGATGGGGGAAGCCTCGACTCTGTGAATACACTGGCCAGTTGTTTTGTTCTTCTTGCCACACAAATGAGACTGCAGTCTTGCCAGCCAGAGTTTTACATCACTGGGATTTTACTCATTATCATGTTTCTCAGCTGGCAAAATCCTATCTAGATTCTATATATGAACAGCCCATGCTCTGTGTCACTGCAGTTAATCCCTTCCTCTTGTCAAAGGTCCCAGCCCTGCTTCATATTATGAGTATCAGAAAAAAGATAGGTATAATGCTTCCATACGTTCGCTGCCCATTTCGGAGGGCCATTAACAGAGGACTTGGAAACAGGAGATATCTTCTCGAAAGCAATGACTTTTTTGCTCTTAGAGATTTGATTGATCTTTCCAGAGGAGTCTTTGCTGCACTTCCTGTGATGGTGGAAACTGTGTCAAGGAAAATCCTGGAACACATTACTGACCAATGCCTTGTATGTTGTGATGTGGGAGACCCCTGCAATGCCCGACAAGATTGCAGTGACCCATCTTCTCTCATTTTCCCATTTCAGGAAGAGGAGATTGAAAGGTGCAAAGCTTGCCAGTTGGTTTTCCATAAGCGTTGCTTTAGAAAACTTGGAAATTGTCCCTGTGGTGCTCAACTCAGATTGAAGGAGACAAGGAGCTTTATTAACAGAGTAAGCCAAAGGGGTGGTGGTGGTGGTGGTGAAACAAGAGGAGCTTTGGACTTATTAGGCAGAGGACTGACTTCTGGGTTGTCACAAAAGTTCCTATCTGGATTTTTTACAACAGAAAAACCAGACAAGACTAAGGACCATAAAGACGAAAATATTATTTTAATGGGCTCCTTACCAACCACTTCTTTATGA	3039	0.433	MNVRGELSSPDPLDSFPPLRVRESDGASDDSEFERYCSANSVMGTPSTSMSMCSAVTLFNDFSDCDFASSAEGFESFSLGKGTTEANCAGNRRRSLRYGSSGLELYGDCSEELALTALDSSELVGFNRIEEPNGNGEVSAGEGGVNGFEFQIDKREEEEEGEELEELSEGDDSMYNYDSDGNGDGGKEIYLTENMGYSEEREVRNENSLFMNTSVAYGSRDLDDFLIQNGPVSVMSDLFHSQRKKNDTLNPGSGQKEQGKNVKDMVIVNEVEETKDIGYSDAVDDAVEKVRDREVVMPASLEESSAPINSPSSVKMPILGSGDLVSCPEVSSVTEVDEVHLDLPEKEAPRNMGLGVNGCGSMEKGNVNSEEAIAGSDAPGVKSELDDSMFRLDHINDDSQFHKSSSNPSSHLENVIAKSFECVEPIAQLSDSGMRKTLESSPTSTNLLEKSPVVSKTEDFELNEFYDEVVQEMEEILLESMDSPGSRLPMGNRLVEPQFSMPSRDGGLTASTSSTDDAYLLVQHPRRIDRIEVVGARQKKGDVSFSERLVGVKEYTVYIIKVWSGKDQWEVERRYRDFFTLYRCMKTLSNEQGWKLPLPWSSVEKETQIFRSASPDIIVKRSVLIQECLQSIIHSRFSPPRALTWFLSHQDSYSISPVSNVPASQSSFTGWQNFRNISNLGKTISLIVDIPPNKSIKQLLEAQHHTCAGCHKHFDNGRTLIWDFVQTFGWGKPRLCEYTGQLFCSSCHTNETAVLPARVLHHWDFTHYHVSQLAKSYLDSIYEQPMLCVTAVNPFLLSKVPALLHIMSIRKKIGIMLPYVRCPFRRAINRGLGNRRYLLESNDFFALRDLIDLSRGVFAALPVMVETVSRKILEHITDQCLVCCDVGDPCNARQDCSDPSSLIFPFQEEEIERCKACQLVFHKRCFRKLGNCPCGAQLRLKETRSFINRVSQRGGGGGGETRGALDLLGRGLTSGLSQKFLSGFFTTEKPDKTKDHKDENIILMGSLPTTSL*	1013

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g0523	1012	MobiDBLite	consensus disorder prediction	156	173	-	-
	Vra5g0523	1012	SUPERFAMILY	PX domain	548	651	IPR036871	GO:0035091
	Vra5g0523	1012	ProSiteProfiles	PX domain profile.	536	654	IPR001683	GO:0035091
	Vra5g0523	1012	PANTHER	DIFFERENTIALLY EXPRESSED IN FDCP 8 HOMOLOG	43	1012	-	-
	Vra5g0523	1012	CDD	PX_domain	543	634	-	-
	Vra5g0523	1012	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vra5g0523	1012	Pfam	Putative zinc-RING and/or ribbon	734	937	IPR025258	-
	Vra5g0523	1012	Gene3D	-	543	653	IPR036871	GO:0035091
	Vra5g0523	1012	SMART	DUF4206_2	734	941	IPR025258	-
	Vra5g0523	1012	MobiDBLite	consensus disorder prediction	156	185	-	-
	Vra5g0523	1012	Pfam	PX domain	563	638	IPR001683	GO:0035091
	Vra5g0523	1012	PANTHER	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	43	1012	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0523	-		-	vra:106762619	1992.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g0523	5	6556165	6562474	Vra5g0523	5	6556165	6562474	ECH