Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0462 ATGGCGGAGGAAGTGGAAGAATCGAATAATGCAGTCAGAATATTCGTGGGAGGATTGGCGGAAACCGTCAGCATCGAAGACCTACGAAGCTTATTCTCCTCTCTTGGCTCCGTCCAAGCCGTTCAAACCATCCGAACCAAAGGTCGCAGCTTTGCCTACATTGATTTTCACTCCGACCCTAAATCCCTTTCTAAGCTCTTCAGCAAGTATAATGGGTGTCTGTGGAAGGGTGGAAGGCTGAGACTTGAGAAGGCCAAAGAAGACTATCTCACGCGGATGAAGAGAGAATGGGAGAATGACGCCCTTGATGATGCTACTCAGCCGCCTCCTAGTTCTCCTAAGGAAGCCACCACACATTCTTCCAAGTCAAATACCAAACATCTCAATATTTTCTTTCCCAGATTGAGAAAGGTGAAATCCATACCATTCAGTGGAACTGGCAAGCACAAATACAGTTTCCAGAATATCAAAGTTCCTCCACTCCCTGTGCATTTTTGTGACTGTGAGGAGCATTGTAGTCCCTTTGTCACTGAAAGAGGGAGGCTATCTATTGATAGGGCAGCTGAAAGTGCTGGAATGAATGATGAAGAGATTAGCATAATGAATGCTGTGATGAACAAGCTACTTCAAAAAGAAAAGATTTCCAGTGTTGAGAGCCTTGGAAAGGAGAAAGATTTGTACAAATCACCTGATACTTTACAATCTGATGAAGCTGAAGATAGCGCAGCAGATGAAGACGATCTCATTATTAACATGGAGACGAAGAGAAATAAAACAGCTTTAATAGGGAACCAGGAGCTTGAAAGAATCCTGGAAAATCAGGAATCCTGGTTTAATAAAACAAAATTTGCTAAGGAAGAACACAACAATAGTATGCCTGAAGTGGAGGGAAGGAATAATAGCAATGCCAACAAGAACAAGAAGAGGAAATCACTTCCCAAATTGGAAATGGAAAGTAATGCAGAAGTATCAACAACCCCTGGAGGCAAGGGTAATAAGCAGACACTTCGAAATAAGGTGGGATCTGGTGCACAGCGTACTGAGCCAGAAGATGGTTTTGAGGAATTGACTAAAGTTTCATGGTCTCAAAAGTCTTCATGGAAAGAACTTCTTGGTGGCGGAGGCAATACTTCTTTCAGTGCTTCTATCATATTACCAAAATTGGACTGCAGTAACAATCTACAAAGATCCGATGACCTGTGTGCACCTGTATCTACAATCAATAAAACTGAAAACATGGAAAAGGATAGAGATTTATGGAGCAACCCTACCATTACGCAAGTGATAAAAGAGCATGCTGATGCTCAACCTACCCATACACAAGTGATAAAAGAGCTTGCTGAAGCTCAACCTGCAAATAAAGAAGTGATAGAAGATGTTACCAAATATCAGCATAATGTGGCACCGAATAAGACAGGCAGAGGAGCTTCATGGCTGCAAAAACAATCCTGGACACAAATGGTTAGTGAGAATAGCAATTCATTTAGCATTGCACATATTTTGCCAGGTATTACTTTTCCTGAGCCAAAGGCCAAGGAGCCCATTGTGGTACCTGCCATTTCCAACCATTTCAAGCATAAGGGAGTAGCTAAGGGTACTATTAATGAATGTGTGAGTAATGACGGGTTTAAATCAAGGGAGACTATACAAGAAAAGAGTCAGCATATCAGTGGCAATGACGTTACTTTTGCTTCAGTAGTTGAGGAAAAGGTTGAAACAAGTCCCAGGGAAAAATCCCCTGAAAATATTGAAATAGGTGAAACGTGCTCATTTATGAGAAATGCTGCATCTTTGAAGGAATGGGCAAAAGCTAAGGCCGCTATTAGTGGATCACTCAAAAGAAAAAGTGATGAGAAGTAA 1860 0.4172 MAEEVEESNNAVRIFVGGLAETVSIEDLRSLFSSLGSVQAVQTIRTKGRSFAYIDFHSDPKSLSKLFSKYNGCLWKGGRLRLEKAKEDYLTRMKREWENDALDDATQPPPSSPKEATTHSSKSNTKHLNIFFPRLRKVKSIPFSGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFVTERGRLSIDRAAESAGMNDEEISIMNAVMNKLLQKEKISSVESLGKEKDLYKSPDTLQSDEAEDSAADEDDLIINMETKRNKTALIGNQELERILENQESWFNKTKFAKEEHNNSMPEVEGRNNSNANKNKKRKSLPKLEMESNAEVSTTPGGKGNKQTLRNKVGSGAQRTEPEDGFEELTKVSWSQKSSWKELLGGGGNTSFSASIILPKLDCSNNLQRSDDLCAPVSTINKTENMEKDRDLWSNPTITQVIKEHADAQPTHTQVIKELAEAQPANKEVIEDVTKYQHNVAPNKTGRGASWLQKQSWTQMVSENSNSFSIAHILPGITFPEPKAKEPIVVPAISNHFKHKGVAKGTINECVSNDGFKSRETIQEKSQHISGNDVTFASVVEEKVETSPREKSPENIEIGETCSFMRNAASLKEWAKAKAAISGSLKRKSDEK* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0462 619 Gene3D - 2 91 IPR012677 -
Vra5g0462 619 SMART rrm1_1 13 83 IPR000504 GO:0003723
Vra5g0462 619 MobiDBLite consensus disorder prediction 225 246 - -
Vra5g0462 619 MobiDBLite consensus disorder prediction 318 342 - -
Vra5g0462 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 59 IPR000504 GO:0003723
Vra5g0462 619 PANTHER TRANSCRIPTIONAL REGULATOR 5 618 - -
Vra5g0462 619 SUPERFAMILY RNA-binding domain, RBD 5 100 IPR035979 GO:0003676
Vra5g0462 619 MobiDBLite consensus disorder prediction 287 355 - -
Vra5g0462 619 MobiDBLite consensus disorder prediction 100 123 - -
Vra5g0462 619 CDD RRM_NOL8 13 86 IPR034138 -
Vra5g0462 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 87 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0462 - - vra:106759673 1228