Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0459 ATGGCCTGCGTGAAACTGGGTTCCAAAGCTGATGCTTTTCAGCGTCAAGGGCAGGCCTGGTTCTGTACTACTGGACTTCCTAGTGATATAGTTGTTGAAGTTGGAGAGATGTCCTTCCATCTTCACAAGTTTCCTTTGCTCTCTAGAAGTGGGGTTCTGGAAAGAATGATCGCCGAGGCTTCTGAATCAGAGGAAGAATGCGCAATATCACTCGGTGACATTCCTGGTGGTGCCAAAACATTTGAACTCGTGGCAAAATTCTGCTATGGGGTGAAACTTGAACTTACTGCATCAAATGTTGTGTACCTGTGGTGTGCTGCAGAGCGTCTAGAAATGACCGAGGAATATGGTGAAGGTAATCTAATTTCACAAGCTGAAACCTTTTTCAATCAAGTGGTCCTCCGCAGTTGGAAAGACTCTCTGAGGGCACTTGAAACCTGTGACGATGTTTTGGCCTATGCTGAAGAGCTCCACATTGTGAAAAGATGCATCGAGTCACTAGCAGCGAAGGCATCTACTGACCCAAATTTATTTGGGTGGCCGGTGCTGGAGCGTGGTGGTCCTTTGCAGAGCCCTGGTGGTAGTGTTTTGTGGAATGGAATAAGTACTGGTGCAAGACCAAAAAATTCAAGTGCAGATTGGTGGTATGAAGATGTGTCAAATTTGAGTTTTCCACTTTATAAGAGATTAGTAGCTGTCATGGAATCGAGGGGCATTAGGCAGGAGATTATTGCTGGTTCTCTTGCTTTCTATGCTAAAACATATCTGCCTATGCTAAACCGACGCCAGGTTTCCGGTGAGTCCAGCACCCGGCTGACACAGGGAGCCATGGGGTCTCCACTGTCTGAAGATGACCAGAAGATTCTACTGGAAGAGATTGATGGTTTGCTCCCTATGCAGAAGGACCTGGTCCAAACAAAGTTCTTGTTTGGTCTACTTCGAACGGCCATGATTCTACGAGTGAGCCCTTCTTGCATATCTAATTTGGAGAAACGGATCGGCATGCAGCTTGACCAAGCTACTCTAGAAGATCTCTTAATGCCAAATTTCTCATACTCCATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTTGACCATTTCCTTGCCATGGATCAGGTTACTGGTGGTGCCTCTCCATGCTCGATCGACGATGGTCAATTGATCGGATCACCTTCATTAACACCAATCACCATGGTAGCCAAGTTGATTGATGGTTACCTTGCAGAGGTTGCCCCAGATATCAACTTAAAACTTCCAAAGTTTCAGGCCCTTGCCGCAGCAGTTCCAGAGTATGCTAGGCCTTTGGATGATGGTTTATATCGTGCATTAGATATTTACTTGAAGTCTCACCCATGGTTGGTGGAGTCTGAGAGAGAGCAGCTATGTAGGCTGATGGATTGCCAGAAGCTCTCATTAGAGGCATGCACGCATGCGGCGCAGAACGAGAGGCTACCGATCAGAATAATTTTTCAAGTTCTATTTTTTGAGCAGCTCCAGCTACGAACTTCCATAGCCGGTTGCTTTCTAGTTTCAGATAATCTGGATGGATCGAGGCAGCTGAGAAGCGGGCTTGTGGGATCAACGGACGGTGGCTGGGCGTCGGCGGTGAAGGAAAATCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGAGGGTGTCTGAGCTGGAGAAGGAGTGTTCAAACATGAGGCAGGAAATTGAGAAATTGGGTCGTTCAAAGGGATCAAGCGCATGGGGAACTGTTTCTAAGAAACTTGGGTTCAAGATGAAGTCTCAGATGTGTAGTGCTCAAGAAGGGTCAGTTAGCAACCAGAACAACAACGGAAATAGTAAGGTTGAGAAGTTGAAGGAAAGACATGTAAAACACAAGAAAAGTTCTTCTATCAGTGACAAGGCATCAGTGTCTTCAATTGTTCATTCATAG 1935 0.4594 MACVKLGSKADAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVLERMIAEASESEEECAISLGDIPGGAKTFELVAKFCYGVKLELTASNVVYLWCAAERLEMTEEYGEGNLISQAETFFNQVVLRSWKDSLRALETCDDVLAYAEELHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNSSADWWYEDVSNLSFPLYKRLVAVMESRGIRQEIIAGSLAFYAKTYLPMLNRRQVSGESSTRLTQGAMGSPLSEDDQKILLEEIDGLLPMQKDLVQTKFLFGLLRTAMILRVSPSCISNLEKRIGMQLDQATLEDLLMPNFSYSMETLYNVDCVQRILDHFLAMDQVTGGASPCSIDDGQLIGSPSLTPITMVAKLIDGYLAEVAPDINLKLPKFQALAAAVPEYARPLDDGLYRALDIYLKSHPWLVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRIIFQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGLVGSTDGGWASAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKLGRSKGSSAWGTVSKKLGFKMKSQMCSAQEGSVSNQNNNGNSKVEKLKERHVKHKKSSSISDKASVSSIVHS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0459 644 PANTHER OS12G0117600 PROTEIN 1 617 IPR043454 -
Vra5g0459 644 CDD BTB_POZ_NPY3-like 19 122 - -
Vra5g0459 644 Coils Coil 542 576 - -
Vra5g0459 644 Gene3D Potassium Channel Kv1.1; Chain A 11 132 IPR011333 -
Vra5g0459 644 ProSiteProfiles NPH3 domain profile. 213 502 IPR027356 -
Vra5g0459 644 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Vra5g0459 644 SUPERFAMILY POZ domain 16 114 IPR011333 -
Vra5g0459 644 MobiDBLite consensus disorder prediction 600 614 - -
Vra5g0459 644 Pfam NPH3 family 213 478 IPR027356 -
Vra5g0459 644 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Vra5g0459 644 MobiDBLite consensus disorder prediction 600 644 - -
Vra5g0459 644 PANTHER - 1 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0459 Vra-Chr5 4852439 4857050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0459 8 632 EF-hand Containing Proteins AT3G44820 46.166 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0459 - - gmx:100794676 1186.02