Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0454 ATGGAAGGAGGTGTGCCTGAGGCTGATATCTCAGCTTTCAGAGAATGTTTATCTCTTTCATGGAAAAACCCTTACGTTCTTCGCCTTGCTTTCTCTGCTGGAATCGGTGGTCTTCTCTTTGGTTATGACACTGGAGTTATATCTGGGGCTCTGTTGTATATCAGAGATGAATTCAAAGAAGTGGATAGAAAAACTTGGCTTCAGGAAGCCATAGTGAGTACTGCAATTGCTGGAGCAATCATAGGGGCTTCAGTTGGAGGATGGATCAACGATCGATTTGGAAGAAAGAAAGGAATTGTTCTAGCAGATATCCTCTTTTTTGCTGGGTCTGCTATTATGGCTGCTGCGAGAAGCCCAACTGTTCTCATTGTGGGTCGTGTGTTCGTTGGCATTGGTGTTGGTATGGCTTCAATGGCATCGCCCCTCTACATTTCAGAGGCTTCACCAACCCGAGTAAGAGGAGCCCTTGTGAGTCTCAACAGTTTTCTCATCACTGGAGGACAGTTCCTTTCATACCTCATCAACTTGGCCTTCACCAAGGCACCAGGGACATGGAGGTGGATGTTAGGGGTAGCAGCAGCACCAGCTTTGGTTCAAGTTGTATTAATGTTGACACTCCCAGAATCACCTCGTTGGCTGTACCGAAAGGGTAGGGAAGAGGAGGCAAAAGCAATTCTGAAAAAGATTTACTCGCCTAGCGAAGTTGAAGGTGAAATTCAGGCTTTGAAGGAATCAGTTGATATGGAAATTAAGGAATCATCAGAGAAGATCGGCTTGATCAAACTGTTGAGAACCCCAGCTGTGAGAAGAGGTTTATATGCAGGCATGGGTCTTCTAATCTTCCAGCAGTTTGTGGGGATCAACACTGTGATGTACTACAGCCCCACCATTGTTCAGTTAGCTGGTTTTGCATCTAACAGAACAGCACTGCTTCTGTCACTCATCACAGCTGGTTTGAATGCATTTGGTTCAATTGTGAGTATATACTTTATTGACAAGGCTGGTAGGAAAAAGCTTGCTCTGATCAGTTTGTGTGGAGTTGTGTTTTCCCTGGCTATGCTAACTGTCTCTTTTCGAGAAAGTGAAATGCATGCTCCAATGGTGAGTGCCATTGGAACCTCTCAGTTCAACAACACATGTCCTGATTACAAAGCAGCTGTGAACCCTAATGAATGGAGTTGCATGACATGCCTAAAGGCTTCATCATCTTGTGGTTTTTGTGCTGCTGATGACAAGCTTTTACCGGGGGCATGTTTGATCTCCAATGATATCACAAAGAAATTGTGTGGCAGTGATCATAGGGCATGGTACACTAGGGGGTGTCCTAGCAAATATGGTTGGAGTGCCTTAGTAGGCCTTGCTCTTTACATAATTTTCTTCTCACCTGGGATGGGAACAGTTCCATGGGTTGTGAACTCTGAGATCTATCCCTTGAGGTACAGAGGAATCTGTGGAGGAATAGCATCCACAACTGTTTGGATTTCCAACCTCATTGTTTCAGAATCCTTTTTGTCCTTGACAGAAGCTATTGGGACAGCGTGGACATTCATGATGTTTGGAATTGTAGCCGTTGTGGCCATTTTCTTTGTCGTTATATATGTACCTGAGACCAAAGGGGTTCCAATGGAAGAAGTGGAGAAGATGCTGGAACAAAGATCATTGCAGTTTAAGTTTTGGCAGAAGAGATATTCTGGCACTGAGAAGCACTGA 1710 0.4456 MEGGVPEADISAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDEFKEVDRKTWLQEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVLADILFFAGSAIMAAARSPTVLIVGRVFVGIGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTKAPGTWRWMLGVAAAPALVQVVLMLTLPESPRWLYRKGREEEAKAILKKIYSPSEVEGEIQALKESVDMEIKESSEKIGLIKLLRTPAVRRGLYAGMGLLIFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITAGLNAFGSIVSIYFIDKAGRKKLALISLCGVVFSLAMLTVSFRESEMHAPMVSAIGTSQFNNTCPDYKAAVNPNEWSCMTCLKASSSCGFCAADDKLLPGACLISNDITKKLCGSDHRAWYTRGCPSKYGWSALVGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGIASTTVWISNLIVSESFLSLTEAIGTAWTFMMFGIVAVVAIFFVVIYVPETKGVPMEEVEKMLEQRSLQFKFWQKRYSGTEKH* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0454 569 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra5g0454 569 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 569 - -
Vra5g0454 569 SUPERFAMILY MFS general substrate transporter 18 547 IPR036259 -
Vra5g0454 569 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 357 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0454 569 Pfam Sugar (and other) transporter 445 548 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra5g0454 569 Pfam Sugar (and other) transporter 30 358 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra5g0454 569 Gene3D MFS general substrate transporter like domains 20 380 IPR036259 -
Vra5g0454 569 Gene3D MFS general substrate transporter like domains 419 557 IPR036259 -
Vra5g0454 569 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 569 - -
Vra5g0454 569 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 538 IPR020846 GO:0022857
Vra5g0454 569 ProSitePatterns Sugar transport proteins signature 1. 327 343 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra5g0454 569 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0454 569 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0454 569 PRINTS Sugar transporter signature 282 292 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0454 569 PRINTS Sugar transporter signature 450 471 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0454 569 PRINTS Sugar transporter signature 473 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0454 569 CDD MFS_HMIT_like 32 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0454 Vra-Chr5 4794259 4799210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0454 1 569 Organic Solute Cotransporters AT1G30220 71.701 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0454 K08150 - gmx:100785028 999.964