Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0441 ATGAAGAGGAAAAGAACGAACGAAAGTGGTGAAAGAACGGAAAAAGATAGACTCAGTGATTTACCAGATGAAGTTCTTCAACACATAATGGAGTTTTTACCCACAAGACAAGCTATTCAGACTTGCGTGTTATCAAAACGATGGAAGAATCTTTGGAAAGGCATCACCACTTTGCATTTCAGATGCACGAATGGAATTCGCAAATACAACAGATATATTATTCATGTTCTCTCTAATCGATATGATTCTATTTCCCTTCGCAATATGAATTTTAGAGTGTTCAGTTCTACTGCACCGAAAGTGATGAACAAAGCCATTGAATACGCTTCATTGCACAATCTCCAGGAGTTGACACTGATCATCATGGATATCAAGTTCAAAGAAATACCCAGTTCTTCCCTTCCCTTTGTTTTCAATTGCAAATCTTTAACCTCGCTTAACCTTTACGCCCGTTCCTCTTCCTCTCCCTTGATATTTCCACCATATCTTCCGCTACCGTTTTTGAAAACCTTGCATCTCTCCAATGTCACATTCAAACCGAGAGATGACAATAACGTCGAACCCTTTTCAGGGTGCACTTCGTTGACCACTTTGGTCCTTGAACATTCCATGCGTACCAATTCATCATACACTCTTTGCATATCAAACCCTACCATTTCCATTTTGAGAATGCAAAGCATAATCTATTGGCATACTTTTCAGCCCAAAATTGTTCTTTCTCTTCCTAAACTCACTTCAATCACACTCGAGAATATTCACTTTCCCGTCTGCTATAAACTCACATGCACTTGTGATCTTCCTCTCCTTAAGGAAGTGAAAATCGACAACCGTGTTCATGTAGATTCTTCCATCATCGTGAATTGGTTACAAATGTTCTCTAACGTAAGAACGTTGATAATTTCATCTCGTACCCTAAAGGATTTACATCTTGATCCACTGGAAATTCAACCTCCCTACTTTGCTAGATTGGAATTATTCAAAATCGAAATGGATTCTAGAACTGTGCTATCTAAAGGTGCTTTAACCAAAGTAGTGGATTACTTCCTACGAAATTGTCAAAGGAGAAATGTTAATGTGAGTGCTGACAGTTATGGCCATGTTTGTAGTTTTATATTGTAA 1119 0.3825 MKRKRTNESGERTEKDRLSDLPDEVLQHIMEFLPTRQAIQTCVLSKRWKNLWKGITTLHFRCTNGIRKYNRYIIHVLSNRYDSISLRNMNFRVFSSTAPKVMNKAIEYASLHNLQELTLIIMDIKFKEIPSSSLPFVFNCKSLTSLNLYARSSSSPLIFPPYLPLPFLKTLHLSNVTFKPRDDNNVEPFSGCTSLTTLVLEHSMRTNSSYTLCISNPTISILRMQSIIYWHTFQPKIVLSLPKLTSITLENIHFPVCYKLTCTCDLPLLKEVKIDNRVHVDSSIIVNWLQMFSNVRTLIISSRTLKDLHLDPLEIQPPYFARLELFKIEMDSRTVLSKGALTKVVDYFLRNCQRRNVNVSADSYGHVCSFIL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0441 372 SUPERFAMILY L domain-like 106 309 - -
Vra5g0441 372 Gene3D Ribonuclease Inhibitor 52 356 IPR032675 -
Vra5g0441 372 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 9 358 - -
Vra5g0441 372 SUPERFAMILY F-box domain 6 74 IPR036047 GO:0005515
Vra5g0441 372 Gene3D - 3 51 - -
Vra5g0441 372 SMART fbox_2 21 61 IPR001810 GO:0005515
Vra5g0441 372 Pfam F-box domain 18 55 IPR001810 GO:0005515
Vra5g0441 372 ProSiteProfiles F-box domain profile. 15 63 IPR001810 GO:0005515
Vra5g0441 372 PANTHER CYCLIN-LIKE F-BOX 9 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0441 Vra-Chr5 4642322 4643530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0441 16 209 EF-hand Containing Proteins AT5G41840 27.982 5.98e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0441 - - vra:106760101 731.095