Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0439 ATGCCATCCCTAAAAATGAAGAGCAAAGTAAGCGTGAGCTGTTTAACAGAAACAAAGGACCTTCATGTGTGTTCGAAATCAAAAGTTATCGCCAAAAGCCCATGTTCTAAAATCATGATCTCTACACAGAAGGCTGAAATAGACACTACTTACCTAGATGTTTCCTCGAGGACACAGCCAAAAGACATAGCATGCGATCAATCTATTGACAGCAAAGAATTTCTGGATAAAGAGAAGTCTGAATCCGAGCACCAATTTTCTGTTTGTTCTTCTGTCCTGGGAAAAATGGAACTAACCAACCCTTGTACAGCAAGCTTAGAAACAATATTTTCTCCTGCCTTTGAGCCCATTGAAGATCATTCACAACATTATACTGAAAAAGATGCAGGGAGCATTGGTGATACAAACTTGGAAGGACTGGGAGCTGATGAGGGAAGAACCATATGTGGTTATGAGACATGTGATGTGTCTGACTTTTACATTTCTGACATGATCATTACAAGCTTACCCTTTGGTGGAAATTCCTTTGATGATGATATCAGTGAAACCAACTGTCTATCTGATTACGCATCTGCTGAGCCTTCCATGTTTACTGCATCTGAACAGTACATGATCCTGCCTGCTCTTGAAGATGATATTAAAGTTGGCTGTACTTCTGATCTCATATCATTTGAAGAAACTGTGATGGTTCGAGAAAGTGCCAGTTTGTATTCGGCAATGGGTCAGATAAGATCCTGCAACCAGGAGTTAGATGTTAAAAGTGACTTGGATAAATCAGAGTGCTTTGATCCACAATCATTTATCAAGAATCTACCCGATCTATCAGAAATAGAAGTGAATGGGCAGCCAACCCTAATTCCTAAGCAATCTCCAAGAAGAAAATCAATAACTCTAGTGCTTGATTTAGATGAAACGCTTGTTCATTCTACACTGGAACACTGTGATGATGCGGATTTCACTTTTAGTGTTTTCTTCAATATGAAAGAATACACGGTATATGTGAAACAAAGGCCTTATCTCCATGCATTCTTGGAGAGAGTATCAGAGATGTTTGAAGTAGTTATTTTTACTGCCAGCCAGAGCATATATGCAAAGCAACTACTTGATATATTGGATCCTGATGGAAGATTTATCTCTCGTCGCATGTATCGAGAATCATGCCTTTTCTCAGATGGAAATTACACAAAAGATCTGACTATATTAGGTGTTGATCTTGCAAAAGTTGCTATAATTGATAATTCACCTCAGGTTTTCCGGTTGCAAGTGAATAATGGTATTCCTATAAAGAGTTGGTTTGATGACCCATTAGATTGCGCACTGATGTCACTACTTCCCTTTCTTGAGACCTTGGCTGATGCTGATGATGTCCGCCCTATCATAGCAAAGAGATATGAATTGGTTCCCCTTTCTTCTCAGTTGACAAATGTGGAGTTCTGTGTTTCTCTCAAAAGGAATCCAGAAGATATGTTAATTATATTGCCATAA 1485 0.3886 MPSLKMKSKVSVSCLTETKDLHVCSKSKVIAKSPCSKIMISTQKAEIDTTYLDVSSRTQPKDIACDQSIDSKEFLDKEKSESEHQFSVCSSVLGKMELTNPCTASLETIFSPAFEPIEDHSQHYTEKDAGSIGDTNLEGLGADEGRTICGYETCDVSDFYISDMIITSLPFGGNSFDDDISETNCLSDYASAEPSMFTASEQYMILPALEDDIKVGCTSDLISFEETVMVRESASLYSAMGQIRSCNQELDVKSDLDKSECFDPQSFIKNLPDLSEIEVNGQPTLIPKQSPRRKSITLVLDLDETLVHSTLEHCDDADFTFSVFFNMKEYTVYVKQRPYLHAFLERVSEMFEVVIFTASQSIYAKQLLDILDPDGRFISRRMYRESCLFSDGNYTKDLTILGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFDDPLDCALMSLLPFLETLADADDVRPIIAKRYELVPLSSQLTNVEFCVSLKRNPEDMLIILP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0439 494 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 466 - -
Vra5g0439 494 SUPERFAMILY HAD-like 285 461 IPR036412 -
Vra5g0439 494 CDD HAD_FCP1-like 296 428 - -
Vra5g0439 494 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 297 460 IPR011948 GO:0016791
Vra5g0439 494 ProSiteProfiles FCP1 homology domain profile. 291 450 IPR004274 -
Vra5g0439 494 SMART forpap2 294 438 IPR004274 -
Vra5g0439 494 PANTHER SCP1-LIKE SMALL PHOSPHATASE 4-RELATED 1 466 - -
Vra5g0439 494 Gene3D - 281 464 IPR023214 -
Vra5g0439 494 Pfam NLI interacting factor-like phosphatase 297 457 IPR004274 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0439 Vra-Chr5 4616265 4630142 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0439 K17616 - gmx:100799803 865.914