Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0435 ATGTTCCCTCTCCGCCGCAAACCCTTTTTCCTTTCCTTCCCCTCACATAGAACATTCCATATCTCTTCATTCCTTCTCCAGAACTTTCCTCAACATTCCAATTCCAATTCCAAACCTCCCTCCCCCGACCTCCTCGACCGAATTTCCCGCCTCCTCCTCCTCCGCCGCCCTGCCTCCCTCAACGGCCTCCGCTTCCCCTTCTCAGACCCCCTCACCGATGCCCTCCTACGCCGCCTCCGCCTTCACCCCGCCGCCGCCCTCGCATTCTTCCAACTCGCCTCCCAACAGTCCCACTACCGTCCCCACGCCACCTCCTTCTGCCTCCTCCTCCACATTCTCGCCCGCGCCAAACTTTTCTCCGAAGCCCGCTCCCTCCTCCACCAACTCCTCTCCCTTCACTGCACCAACAACTTCCGTGCCTTCGCCGTCTGTCGCGAGGTCGTTTCCGTTTACAAGGAATTTGGCTTTTCCCCCACCGTTTTTGACATGCTTCTCAAGGCGTTCGCTGAACGTGGCATGACGCGCCACGCACTCAACGTGTTCGACGAAATGAACAGGCTCGGCAGGATCCCCTGCCTCAGGTCCTGCAATTGCCTGCTCGCTAGGCTGGTACGTGCCGGTGAAGTAGGCCAGGCGCTGACTGTTTTTGAGCAGGTTTTGAAAATGGGGATTGTGCCTGACGTTTTCANGATTAGTATTGTTGTGAACGCGCATTGTCGGGAAGGGAATGTGGATTGCGCTGAGAGGTTTGTGGAGAAGATGGTGGGGATGGGGTTAATGTTATTGTGTACAATGCTTTGGTTGGAGGGTATGCTTGTAAGGGTGATGTGGGAGAAGCTGAGAGGGCTGGATTTAATGTCTAGGAAAGGGGTGGAGAGAAATGTGGTCACTTGGACTTTGTTGATGAAAGGTTACTGCAGGCAGGGAAGGGTGGATGAGGCCGAGAGGTTGCTTCGGAGAATGGAGGAGGATGAGGTGATTTTTTTGGATGATCGCGTGTATGGTGTGCTGGTGAATGGGTATTGTCAGGTGGGGAAGATGGATGATGCGGTTAGGATTCGAGATGAGATGGCAAGGGTGGGGTTGAAGGTGAATGTGTTTGTTTGTAATGCGTTGGTTAATGGCTACTGTAAGCAGGGTCGGATAAGAAAGGCCGAAGAGGTGTTTAGGGGAATGTTGGATTGGAATGTGAAACCGGATTGTTATAGTTATAATACTCTGTTGGATGGGTACTGCAGGGAAGGGAGAATGAGTGAGGCTTTGATGCTTTGTGAGGAGATGTTAAGGGAGGGAATTGATCCTTCGGTTGTGACCTATAATACGGTTCTCAAAGGGTTGGTTGATGTGGGGTCTTACGACGATGCTTTGAGCCTTTGGCGCTCGATGGTGGAACGAGATGTGGTGCCGAATGAAGTCAGCTGCTGTACTCTGCTCGATTGTTTTTTCAAAATGGGAGATTCTGATGGGGCTATGAAGCTTTGGAAAGAGATTTTGGGTCGGGGTTTTACTAATAGCACTGTTGCATTCAATACAATGATCGGTGGGCTTTGTAAGATGGGGAAAGTGGCGGATGCAAAGGTTGTTTTTGATAGGATGAAGGAACTTGGATGCTCGCCTGATGAAATAACATATAGGACATTGAGTGATGGATATTGTAAAACTGGTAGTGTTATCGAAGCTTTTAGAATCAAAGATATGATGGAAAGACAAACAATTTCTCCATCCATTGAAATGTACAATTCCCTTATTTATGGACTATTCAAGTCTAGGAAGTCAAGTGATGTTGCTGATCTTCTAGTTGAGTTACGGACGAGAGGACTATCACCAGATACTGTTACCTATGGTACCCTTATTTACGGTTGGTGCAATGAAGGGAAGCTGGATAAAGCTTTTAATTTATATTTTGAGATGATCGAAAGAGGGTTCTCTCCTAATTTTGTGATATGTAGCAAAATAGTCAGCAGTCTTTATAAGAATGACAGAATCAATGAAGCAACTGTGATCCTAAGCAAGATGGTGGATTTTGATCTTCTTACGGTTCATAAATGTTCTGATAAGTCTGTTAAGAATGATTCCACAGGTCTAGAAGCTCAAAGAATTGCTGATTCTCTTGATAAAATTGCTATATGTAATTCTCTTCGTAGCAATATTGTGTACAACATAGCTATCTATGGTCTTGGCAAATCTGGGAAGATTGATGAAGCAAGAAGTGTTCTGTCAATTTTGTTATCTAGAGGTTTTCTTCCAGATAATTTCACATATGGTGCCTTAATTCATGCCTGTTCAGCTGCTGGTGATGTAGATGGTGCTTTCAACTTAAGGAATGAGATGCTGGAGAGAGGTCTTATTCCAAATATCACTACATATAATGCTTTAATAAATGGGTTATGCAAATTGGGAAATATGGAACGAGCACAGAGACTTTTCCGTAAACTTCCTCAAAAGGGCTTAGTTCCAAATGTCGTTACCTATAATATACTAATCAGTGGTTACCTTAGGATTGGGGACCTTAATGAAGCCTCTAACTTGAGAGAGAAGATGATTGAAGAAGGGATTTCTTGA 2562 0.4598 MFPLRRKPFFLSFPSHRTFHISSFLLQNFPQHSNSNSKPPSPDLLDRISRLLLLRRPASLNGLRFPFSDPLTDALLRRLRLHPAAALAFFQLASQQSHYRPHATSFCLLLHILARAKLFSEARSLLHQLLSLHCTNNFRAFAVCREVVSVYKEFGFSPTVFDMLLKAFAERGMTRHALNVFDEMNRLGRIPCLRSCNCLLARLVRAGEVGQALTVFEQVLKMGIVPDVFXISIVVNAHCREGNVDCAERFVEKMVGMGLMLLCTMLWLEGMLVRVMWEKLRGLDLMSRKGVERNVVTWTLLMKGYCRQGRVDEAERLLRRMEEDEVIFLDDRVYGVLVNGYCQVGKMDDAVRIRDEMARVGLKVNVFVCNALVNGYCKQGRIRKAEEVFRGMLDWNVKPDCYSYNTLLDGYCREGRMSEALMLCEEMLREGIDPSVVTYNTVLKGLVDVGSYDDALSLWRSMVERDVVPNEVSCCTLLDCFFKMGDSDGAMKLWKEILGRGFTNSTVAFNTMIGGLCKMGKVADAKVVFDRMKELGCSPDEITYRTLSDGYCKTGSVIEAFRIKDMMERQTISPSIEMYNSLIYGLFKSRKSSDVADLLVELRTRGLSPDTVTYGTLIYGWCNEGKLDKAFNLYFEMIERGFSPNFVICSKIVSSLYKNDRINEATVILSKMVDFDLLTVHKCSDKSVKNDSTGLEAQRIADSLDKIAICNSLRSNIVYNIAIYGLGKSGKIDEARSVLSILLSRGFLPDNFTYGALIHACSAAGDVDGAFNLRNEMLERGLIPNITTYNALINGLCKLGNMERAQRLFRKLPQKGLVPNVVTYNILISGYLRIGDLNEASNLREKMIEEGIS* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0435 853 Pfam PPR repeat 161 188 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vra5g0435 853 SUPERFAMILY HCP-like 721 850 - -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 785 819 IPR002885 -
Vra5g0435 853 Coils Coil 849 853 - -
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 360 449 IPR011990 GO:0005515
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 450 559 IPR011990 GO:0005515
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Vra5g0435 853 PANTHER - 40 841 - -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vra5g0435 853 Pfam PPR repeat family 717 761 IPR002885 -
Vra5g0435 853 Pfam PPR repeat family 505 553 IPR002885 -
Vra5g0435 853 Pfam PPR repeat family 784 831 IPR002885 -
Vra5g0435 853 Pfam PPR repeat family 365 413 IPR002885 -
Vra5g0435 853 Pfam PPR repeat family 434 482 IPR002885 -
Vra5g0435 853 Pfam PPR repeat 289 322 IPR002885 -
Vra5g0435 853 Pfam PPR repeat 222 255 IPR002885 -
Vra5g0435 853 Pfam PPR repeat 329 357 IPR002885 -
Vra5g0435 853 Pfam PPR repeat 605 637 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 80 266 IPR011990 GO:0005515
Vra5g0435 853 PANTHER ATPASE EXPRESSION PROTEIN 3 40 841 - -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 788 821 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 542 575 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 717 750 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 195 228 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 160 188 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 437 471 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 296 325 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 232 258 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 507 541 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 822 853 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 612 645 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 472 502 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 752 786 IPR002885 -
Vra5g0435 853 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
Vra5g0435 853 SUPERFAMILY TPR-like 367 535 IPR011990 GO:0005515
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 771 853 IPR011990 GO:0005515
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 560 698 IPR011990 GO:0005515
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 699 770 IPR011990 GO:0005515
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 820 853 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Vra5g0435 853 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Vra5g0435 853 Gene3D Tetratricopeptide repeat domain 267 359 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0435 Vra-Chr5 4564458 4567686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0435 309 853 Glycosyltransferase AT1G05670 28.080 5.98e-64 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0435 - K17964 gmx:100811926 1315.06