Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0405 ATGCAATCCGAGAGTTTGAGCCAGACTCCAGCTCTGACACTCTTTCCTGGCCTGAAACCCCCTCACAAAACCCTACTATTCCACAAAATATGTGTTCTTGTCATCACATTCCTTGCATATGCTTCCTTCCATGCCTCTAGGAAGCCCCCCAGCATTGTCAAGAGTGTTCTGGGACCCACAGTGCCATCGAATGCAGCTCAAGTTTCCAACTTGAGCTCCTATGATACTGGGTGGCCACCTTTCAATGGAACCCGAGGTACTCACAGGCTGGGCGAGCTTGATCTTGCATTCCTCACTTCTTACTCCATCGGCATGTATTTCGCTGGTCACGTTGGGGATCGGATTGATTTGAGGTTGTTTCTTGTATTTGGGATGATGGGCAGTGGCTTTTTTACCATACTTTTTGGGTTAGGTTATTGGTTAGATGTTCATGTGTTGGGGTTTTTTGTTGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGTTGGCCTTGTGTGGTTGCAGTTGTGGGGAATTGGTTAGGGGAATCAAAGAGGGGCTTGATAATGGGGGTATGGAATTCGCATACCTCGGTGGGGAATATCATTGGTTCAGTGGTGGCTTCAGGGGTTTTGGAGTTTGGCTGGGGTTGGTCCTTTGTGGTGCCTGGACTCCTTATAATTTTGGTGGGGATTTTGGTGTTTTTGTTTCTTGTCGTGAACCCCGAGAGTATGGGATTTGTGCATCCTGGAATGGGCATCGAAATGAGTGTTGACACCAGAAATGTAGAGAATCTGCAGAAAGGGGAATCGGAGGAAACTAAGCTTATTGAGTCTGATAATTCAGATTCTTCTTCTGCAATTGGGTTTTTGGAGGCATGGAAGTTACCAGGAGTGGCTCCGTTTGCTTTCTGTCTCTTTTTCTCCAAGCTAGTGGCTTATACCTTTCTGTATTGGTTGCCCTACTACATAAAGCACACTGCTGTTGCCGGTGTGCATATCTCACACAAAACTGCTGGGTTGCTATCAACGATATTTGACATTGGGGGAGTCCTAGGAGGAATCACAGCTGGTTTCGTTTCTGACTTGATTGAAGCACGTGCTATTACTGCAATTCTATTCCTGTTTCTATCAATTCCAGCACTTGCTTCCTATCGCATATTTGGGAGCCTCTCCATGTTGATGAACATCAGTTTAATGTTTCTTTCGGGGTTTTTGGTGAATGGTCCATATTCGCTCATCACAACTGCAGTGGCTGCTGATCTTGGTACGCAAAGCTTGAATGATCGGAATTCCCGAGCACTGGCGACTGTTACTGCAATTATAGATGGCACCGGTTCTGTTGGCGCTGCCCTTGGGCCACTTTTGGCTGGATATATTTCGACTAGGGGATGGAACAGTGTCTTTTTTATGCTCATTCTGTCTATTTTCTTTGCTGGTTTATTCTTGATTCGTATTGCAAGAACTGAGATAAGAGAGAAGCTTTCAGGAAAGTGA 1479 0.4557 MQSESLSQTPALTLFPGLKPPHKTLLFHKICVLVITFLAYASFHASRKPPSIVKSVLGPTVPSNAAQVSNLSSYDTGWPPFNGTRGTHRLGELDLAFLTSYSIGMYFAGHVGDRIDLRLFLVFGMMGSGFFTILFGLGYWLDVHVLGFFVGVQIVCGVFQSIGWPCVVAVVGNWLGESKRGLIMGVWNSHTSVGNIIGSVVASGVLEFGWGWSFVVPGLLIILVGILVFLFLVVNPESMGFVHPGMGIEMSVDTRNVENLQKGESEETKLIESDNSDSSSAIGFLEAWKLPGVAPFAFCLFFSKLVAYTFLYWLPYYIKHTAVAGVHISHKTAGLLSTIFDIGGVLGGITAGFVSDLIEARAITAILFLFLSIPALASYRIFGSLSMLMNISLMFLSGFLVNGPYSLITTAVAADLGTQSLNDRNSRALATVTAIIDGTGSVGAALGPLLAGYISTRGWNSVFFMLILSIFFAGLFLIRIARTEIREKLSGK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0405 492 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 486 IPR020846 GO:0022857
Vra5g0405 492 PANTHER MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B 4 490 - -
Vra5g0405 492 Pfam Major Facilitator Superfamily 55 415 IPR011701 GO:0022857|GO:0055085
Vra5g0405 492 PANTHER GLYCEROL-3-PHOSPHATE TRANSPORTER 5-RELATED 4 490 - -
Vra5g0405 492 Gene3D MFS general substrate transporter like domains 25 244 IPR036259 -
Vra5g0405 492 SUPERFAMILY MFS general substrate transporter 28 485 IPR036259 -
Vra5g0405 492 Gene3D MFS general substrate transporter like domains 288 490 IPR036259 -
Vra5g0405 492 PIRSF Hexose_phosphate_transp 20 491 IPR000849 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0405 Vra-Chr5 4208513 4211256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0405 1 492 Organic Solute Cotransporters AT2G13100 71.660 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0405 K13783 - gmx:100813689 904.82