Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0394 ATGGCAGGCGGGTCTTTCACAACTGGTGCTGTTACCAAGGAGAGAGCACAACAATATAAGGGAAGAGTCACCCCTTATGTCATCGTCGCTTGCATTGTTGCTGCCACTGGAGGGTCTCTCTTTGGCTATGATATTGGGATTTCAGGTGGTGTTACATCTATGGATGACTTCCTTAAAGAGTTCTTCCCTGCAGTATACAGACAGAAATTGCATGCACATGAAAATAACTACTGCAAGTACGACAATCAGGGTCTTGCTGCATTCACCTCTTCTCTTTACATTGCTGGTTTAATTGCATCCTTGATGGCATCTCCTGTGACAAGAAAGTATGGTCGTCGAGCAAGTATCATAGGTGGTGGTATTAGCTTTCTGATTGGATCAGCCCTGAATGCTTCAGCTGTGAACCTCACAATGCTGATATTAGGCCGGGTCATGCTTGGTGTTGGCATTGGATTTGGAAATCAGGCTATTCCGCTTTATTTGTCAGAGATGGCACCGACACACCTTCGAGGTGGTCTGAACATGTTGTTTCAAGTTGCAACCACTCTTGGGATTTTCACAGCTAACATGGTCAATTATGGAACACAAAAGATCAAACCTTGGGGTTGGAGGCTGTCTCTAGGCTTGGCTGCAGTACCAGCTCTTTTGATGACAGTGGGAGGGATATTTCTCCCTGACACTCCAAATAGCTTAATCGAACGAGGATTGAAGGAAAAAGGAAGGAAGCTGCTAGAAAAAATCAGAGGAACCAACGAGGTTGATGCCGAGTTCCAAGATATGGTTGATGCAAGCGAGTTGGCAAACTCAATAAAGCATCCATTTCGTAACATCCTTGAAAGAAGGTACAGACCAGAGTTGGTGATGGCAATCTTCATGCCCACCTTTCAGATTCTCACTGGCATAAATTCCATTCTCTTCTATGCTCCGGTTCTGTTTCAAAGCATGGGATTTGGAGGAGATGCATCACTCATCTCTTCAGCCTTGACCGGTGGAGTTCTTGCTGGTTCAACATTCATTTCCATAGCAACAGTAGATAAGTTGGGCAGGCGAGTTCTTCTTATCAGTGGCGGAGCACAAATGATCACATGCCAGGTTATAGTGGCCATTATTTTAGGGGTGAAGTTTGGAGCAGAGCAAGAACTGTCAAAAGGGTTTTCAATTTTGGTGGTTGTGGTGATATGCCTATTTGTTGTTGCTTTTGGGTGGTCATGGGGTCCACTTGGGTGGACAGTTCCTAGTGAGATATTTCCATTGGAAATCAGGTCAGCAGGGCAAGGGATGACAGTTGCAGTGAATCTTCTGTTTACTTTTATAATAGCACAGGCCTTCCTTGCTCTTCTCTGCTCATTCAAGTTTGGGATCTTCCTCTTCTTTGCTGGGTGGATTACCATCATGACCATCTTTGTTTATCTCTTTCTACCTGAAACCAAGGGGATTCCCATTGAAGAGATGTCTTTTATGTGGAGGAAGCACTGGTTCTGGAAAAGGATATGCCTCAACTGA 1503 0.4471 MAGGSFTTGAVTKERAQQYKGRVTPYVIVACIVAATGGSLFGYDIGISGGVTSMDDFLKEFFPAVYRQKLHAHENNYCKYDNQGLAAFTSSLYIAGLIASLMASPVTRKYGRRASIIGGGISFLIGSALNASAVNLTMLILGRVMLGVGIGFGNQAIPLYLSEMAPTHLRGGLNMLFQVATTLGIFTANMVNYGTQKIKPWGWRLSLGLAAVPALLMTVGGIFLPDTPNSLIERGLKEKGRKLLEKIRGTNEVDAEFQDMVDASELANSIKHPFRNILERRYRPELVMAIFMPTFQILTGINSILFYAPVLFQSMGFGGDASLISSALTGGVLAGSTFISIATVDKLGRRVLLISGGAQMITCQVIVAIILGVKFGAEQELSKGFSILVVVVICLFVVAFGWSWGPLGWTVPSEIFPLEIRSAGQGMTVAVNLLFTFIIAQAFLALLCSFKFGIFLFFAGWITIMTIFVYLFLPETKGIPIEEMSFMWRKHWFWKRICLN* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0394 500 CDD MFS_STP 33 475 IPR044778 GO:0015145|GO:0015749
Vra5g0394 500 ProSitePatterns Sugar transport proteins signature 1. 340 357 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra5g0394 500 PANTHER - 4 497 - -
Vra5g0394 500 ProSitePatterns Sugar transport proteins signature 2. 145 170 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra5g0394 500 SUPERFAMILY MFS general substrate transporter 23 484 IPR036259 -
Vra5g0394 500 Pfam Sugar (and other) transporter 31 488 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra5g0394 500 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0394 500 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0394 500 PRINTS Sugar transporter signature 140 159 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0394 500 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0394 500 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0394 500 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra5g0394 500 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 4 497 IPR045262 GO:0015144
Vra5g0394 500 Gene3D MFS general substrate transporter like domains 19 491 IPR036259 -
Vra5g0394 500 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 477 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0394 Vra-Chr5 4080719 4085271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0394 1 497 Organic Solute Cotransporters AT4G02050 79.276 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0394 K24193 - gmx:100820434 921.768