Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0370 ATGGTTCCTCTTAGTCTCTCGTCACAACAATTATTTTCAAATCTTCGTTTCATTTCCGTCTCCACCTTCAATCCTTATCTTAGATTCTTTGGATTCAGGTACATTTGTTCTGACTACCCAGAATCTCAAAACGCAAGACTCAGATCACGAAATGAAAGTAAAACGGCCAAAACCATGGCCAATCTTATCAATTCCAAACCATGGTCAAACGCGTTGGTCTCGTTTCTGCCCACCCCTCTCTCCAAAACGACGGTGCTCCGAACCCTTCGCCTCATCAGGGACCCTTCCAAAGCCCTTCGCTTTTTCAAGTGGGCTCAGCAAAGTGGTTTTTCCCACACAGCTCAGTCTTACTTCATCTTGCTACAAATTCTGGGTCGCCATAGGAACCTCAACGTTGCCCGAAACTTGCTTTTTTCAATCGAGAAAAAGTCTAACGGAACCGTCAAGCTTGAAGACAGGTTCTTCAATACCCTCATCAGAAGCTACGCCGAAGCAGGCCTCTTCAAAGAGTCCTTGAAGCTTTTTCAGACCATGAAGTCCGTTGCTGTTTCCCCCTCCGTGGTTACCTTCAACTCTGTTTTGTCTATTTTGCTTAAAAGGGGTCGCACCAATATGGCCAAAGAGGTGTATGATGAAATGCTTCACACGTATGGTGTTAGTCCAGACACTTGTACATACAATGTTTTGATCAGAGGGCTTTGCAAAAACTCAATGGTCGATGAAGGGTTTCGGTTCTTTAAAGAGATGGCTAGTTTTAATTGTGACCCGGATGTTGTCACGTATAACACTCTTGTTGATGGTTTATGTAGAGCAGGGAAGGTTAGAATTGCTCGGAATTTAGTAAATGCTATGAGCAAGAAATGTGAGGGTTTGAATCCTAATGTTGTTACTTATACCACTTTGATCCGAGGGTATTGTATGAAGCAAGAAGTTGATGAGGCATTGGTAGTTCTTGAAGAGATGAGTGGCCGGGGCATTGAGCCGAACATGGTTACCTATAATACTTTGATAAAAGGGCTCTGTGAGGTACACAAGTTGGACAAGATGAAAGATGTTTTGGAATTGATGAAAGACAATGGGGGTTTTAGCCCTGATACATTTACCTTTAATACAATTATTCATTCGCATTGCTGTGCAGGAAATTTGGATGAAGCATTGAAGGTGTTTGAAAGTATGAAGAAATTTCAGATCCGCATGGATTCAGCCTCGTACAGCCCTCTGATACGTTGTTTGTGTCAGAAAGGGGACTATGATATGGCAGAGGTGTTATTTGATGAGTTATTTGAGAAGGAAATCCTATTGAGTAATTTTGGCTCCAAACCACTTGCTGCTTCTTATAGTCCTCTTATTCAGTATTTGTGTGAACATGGGAAGAGTAAGAAGGCCGAGAGGGTGATGAGACAGTTAATGAAAAGGGGCACACAAGATGGCCAATTATACAACACATTGATTATGGGGCATTGTAAAGAAGGTACATACGAAAGTGGATATGAGCTTTTAGTGTGGATGCTGAGAAGAGACTTTCTACCTGATGTTCATATATATGATTCCTTGATTGATGGTTTTCTTTTAAAGAATAAGCCTCTGCTTGCAAAGGAGACACTAGAGAAAATGCTTAAGAGCTCCTATCAACCTAAAACAGCCACCTGGCATTCCATACTAGCAAAACTGTTGGAAAAGGGTTGTGCTCATGAGTCTGCCTGTGTTATTTTGATGATGCTGGAGAAAAATGTTAGACAGAATATAAACCTGTCAACTGAAAGTTTAAAGCTACTTTTTAGATGTGGACAGCAGGAAAGAGCATTTGAAATTATTGATTTGCTTTATAAGAATGGATACCGTGTTACAATAGAAGAAGTGGTTCAATTTCTTTTTGAGAGAGGAAAGCTATCAGAAGCATGCAAAATGTTGTTTTTTAGTTTTAAAAATCATCAGAATGTCAATATTGATTTGTGTAATGCAATTGTTCTGAATCTTTGTAAAACTAACAAGGTCTCAGAAGCATTTAATTTATGCTATGAATTGGTGGAGAAAGGTTTATGTCAGGAATTGACATGTCTAAATGATCTACTGGCTGCTTTAGAGGAAGGGGGAAGAAGAGAAGAAGCTATATTTATATCAAAGAGATTACCAAGACTGGAGAAATTAGATGAATCTAAAGGAAATCATGGCTCTAAGAAGTTCAGGCCTATTAAAGTGTGA 2202 0.3987 MVPLSLSSQQLFSNLRFISVSTFNPYLRFFGFRYICSDYPESQNARLRSRNESKTAKTMANLINSKPWSNALVSFLPTPLSKTTVLRTLRLIRDPSKALRFFKWAQQSGFSHTAQSYFILLQILGRHRNLNVARNLLFSIEKKSNGTVKLEDRFFNTLIRSYAEAGLFKESLKLFQTMKSVAVSPSVVTFNSVLSILLKRGRTNMAKEVYDEMLHTYGVSPDTCTYNVLIRGLCKNSMVDEGFRFFKEMASFNCDPDVVTYNTLVDGLCRAGKVRIARNLVNAMSKKCEGLNPNVVTYTTLIRGYCMKQEVDEALVVLEEMSGRGIEPNMVTYNTLIKGLCEVHKLDKMKDVLELMKDNGGFSPDTFTFNTIIHSHCCAGNLDEALKVFESMKKFQIRMDSASYSPLIRCLCQKGDYDMAEVLFDELFEKEILLSNFGSKPLAASYSPLIQYLCEHGKSKKAERVMRQLMKRGTQDGQLYNTLIMGHCKEGTYESGYELLVWMLRRDFLPDVHIYDSLIDGFLLKNKPLLAKETLEKMLKSSYQPKTATWHSILAKLLEKGCAHESACVILMMLEKNVRQNINLSTESLKLLFRCGQQERAFEIIDLLYKNGYRVTIEEVVQFLFERGKLSEACKMLFFSFKNHQNVNIDLCNAIVLNLCKTNKVSEAFNLCYELVEKGLCQELTCLNDLLAALEEGGRREEAIFISKRLPRLEKLDESKGNHGSKKFRPIKV* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0370 733 Pfam Pentatricopeptide repeat domain 155 197 IPR002885 -
Vra5g0370 733 Pfam Pentatricopeptide repeat domain 503 554 IPR002885 -
Vra5g0370 733 Gene3D Tetratricopeptide repeat domain 434 568 IPR011990 GO:0005515
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 188 223 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 480 512 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 445 473 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 259 287 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 296 329 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 155 186 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 403 432 IPR002885 -
Vra5g0370 733 TIGRFAM PPR: pentatricopeptide repeat domain 331 366 IPR002885 -
Vra5g0370 733 PANTHER ATPASE EXPRESSION PROTEIN 3 42 715 - -
Vra5g0370 733 SUPERFAMILY HCP-like 376 544 - -
Vra5g0370 733 Pfam PPR repeat family 293 341 IPR002885 -
Vra5g0370 733 Pfam PPR repeat family 221 270 IPR002885 -
Vra5g0370 733 Pfam PPR repeat 403 430 IPR002885 -
Vra5g0370 733 Pfam PPR repeat 653 680 IPR002885 -
Vra5g0370 733 Pfam PPR repeat 480 501 IPR002885 -
Vra5g0370 733 Pfam PPR repeat 445 473 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vra5g0370 733 Pfam PPR repeat 361 393 IPR002885 -
Vra5g0370 733 Gene3D Tetratricopeptide repeat domain 572 728 IPR011990 GO:0005515
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 287 IPR002885 -
Vra5g0370 733 Gene3D Tetratricopeptide repeat domain 216 285 IPR011990 GO:0005515
Vra5g0370 733 Gene3D Tetratricopeptide repeat domain 286 356 IPR011990 GO:0005515
Vra5g0370 733 Gene3D Tetratricopeptide repeat domain 45 215 IPR011990 GO:0005515
Vra5g0370 733 Gene3D Tetratricopeptide repeat domain 357 433 IPR011990 GO:0005515
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 221 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Vra5g0370 733 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 42 715 - -
Vra5g0370 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0370 Vra-Chr5 3828361 3831265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0370 479 710 Miscellaneous Gene Families AT4G11690 23.276 5.47e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0370 - - gmx:100794080 1192.18