Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0349 ATGGCATTTGCATATGAACAATTTCTTCTTTTGTTGATGGCTTTTTCAACATGTTTCTCATCAACTAGCAGCAATTCATCTGTTAAACCTCAAAGACTGGTCTCCAGACTCATTCACCCAGGCTCAATTCATCATCCTCACTACAAGCCACATGCAACAGCTCAAGACCGAATTCAACTTGATATCCAACAATCAGCAGCACGTTTAGCCTACATACAAGCAAGGATAGAAGGTTCTTTGGTCTCTAATAATGACAACAAAGCTAGTGTTTCTCCCTCTTTAACTGCTAGAACCATACTGGCCAATATCTCAATAGGCCAACCCCCTATCCCACAACTAGTTATTATAGACACTGCCAGTGACAGCTTCTGGATCATGTGCTCCCCTTGCACAAATTGTGACAACCATTTAGGNCCACTCTTTGACCCCTCAAAGTCTTCCACCTTTTTCCCACAGTGCAAAATACCATGTCTCTTCAAGGGTTGTAAATGTGACCCTATTCCATTTCGTGCCTCTTATGCAGATGGCTCCACAGCTTCAGGAACATATGGTCGTGATACTGTTGTCTTTGAGACAACTGATGAAGGTACCTCTAAGATATTTGATGTACTATTTGGATGTGGCCACTACATTGGATACGATTCGGATCCAGGACATAATGGAATACTAGGACTAAACAGTGCAGTTGAATCTTTGGCAACAAAAATGGGTAGAAAGTTTTCTTACTGCATAGGCAACCTGGCTGACCCTCATTACAATTACAACCAACTGATATTAGGTGAAGGGGCAGATCTTGAAGGTTTTTCCACCCCTTTTCAAGTCCACAATGGCTTTTATTATGTCACCATGGAAGGCATAAGTATAGGGGAGAAAATGCTTGACATACCTCCAAGAACTTTTGAGAGAAAAGAGAATGGCACAGGAGGAGTCATCATTGACACAGGCAGCACTATCAGCTACCTAGTTGATAATGTGCATAAACTAATCTACAAAGAAGTTAGAAATCTCATTGGTAGGTCCTTTAGAGGAGCAATAATTGAAAATTCCCCATGGATGTTGTGTTATTATGGTAGTATCAACAAAGATCTAGCTGGGTTTCCAGTGGTTACATTCCATTTTGCTGAAGGAGCAGATTTGGCTATGGATTCTGGAAGCTTTTTTAGTCAAGTCAGTAATGACATATTCTGCATGACTATAGGTCCAGCCAGTAACATCGACATTAAAAGTAAGCCTTCAGTTGTTGGATTGTTAGCCCAACAGAGCTACAACGTGGGATATGACCTTGTTAATAACTATGTTTATTTCCAAAGAATTGATTGTGAACTTCTTAGTGGTTGA 1338 0.4058 MAFAYEQFLLLLMAFSTCFSSTSSNSSVKPQRLVSRLIHPGSIHHPHYKPHATAQDRIQLDIQQSAARLAYIQARIEGSLVSNNDNKASVSPSLTARTILANISIGQPPIPQLVIIDTASDSFWIMCSPCTNCDNHLGPLFDPSKSSTFFPQCKIPCLFKGCKCDPIPFRASYADGSTASGTYGRDTVVFETTDEGTSKIFDVLFGCGHYIGYDSDPGHNGILGLNSAVESLATKMGRKFSYCIGNLADPHYNYNQLILGEGADLEGFSTPFQVHNGFYYVTMEGISIGEKMLDIPPRTFERKENGTGGVIIDTGSTISYLVDNVHKLIYKEVRNLIGRSFRGAIIENSPWMLCYYGSINKDLAGFPVVTFHFAEGADLAMDSGSFFSQVSNDIFCMTIGPASNIDIKSKPSVVGLLAQQSYNVGYDLVNNYVYFQRIDCELLSG* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0349 445 Gene3D Acid Proteases 82 258 IPR021109 -
Vra5g0349 445 SUPERFAMILY Acid proteases 100 440 IPR021109 -
Vra5g0349 445 CDD pepsin_A_like_plant 100 440 IPR034161 -
Vra5g0349 445 ProSiteProfiles Peptidase family A1 domain profile. 99 436 IPR033121 -
Vra5g0349 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 310 321 IPR001969 GO:0004190|GO:0006508
Vra5g0349 445 PANTHER OS07G0603500 PROTEIN-RELATED 23 442 - -
Vra5g0349 445 Pfam Xylanase inhibitor C-terminal 279 436 IPR032799 -
Vra5g0349 445 Pfam Xylanase inhibitor N-terminal 101 260 IPR032861 -
Vra5g0349 445 Gene3D Acid Proteases 266 443 IPR021109 -
Vra5g0349 445 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 23 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0349 Vra-Chr5 3444852 3446853 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0349 - - var:108344101 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0349 5 3444852 3446853 Vra5g0349 5 3444852 3446853 ECH