Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0323 ATGATCAAAGGTAGCGACGTGTATGATGTAGTGGCAGCTATTGTGCCCCTCTACGTGGCTTTGATCTTAGCATATGGCTCNGTCCGTTGGTGGAAGATCTTCACCCCAGAACAGTGCTCTGGCATAAACCGTTTTGTGNNTGTTTTTGCNGTGCCCTTNCTCTGTTTTCNTTTCATATCCANCAANNACCCTTACACCATGAANTTCAGGTTCTTAGCCGCGGACTCTCTTCAAAAGGTTGTGATTTTGGTTGCACTTGTTCTGTGGAACGCTTTCACAAAATGGGGTAGCCTTGACTGGACCATCACACTGTTCTCACTCTCCACTCTCCCCAACACGCTCATCATGGGGNTTCCTNTTCTNAAAGCCATGTACGGAGANTTCACAGGCACCCTCATGATCCAAATTGTGGTTTTTCAGAGTGTGATTTGGTACACTCTCTTGCTGTTCATGTTTGAATATAGAGCGGCTAAGCTACTCATTATGGAGAATTTCCCTGATACAGCAGCTTCTATATCCTCCTTTCGAGTTGATTCACATGTTGGTTCTCTGGGTGGTCGAGAGATGCTAGAAACTAATGTAGAAACCGGAGAAGATGGGAATGTTCACGTAGTGGTGAGGAGCATGTCACGTTCTGTGTCCGTTGCATCAAACCTCACTGGGATTAGGATCTATTTAGAGGAGTCGTCTAGAGAACCAAAGCTGGGAAGATCAAATTTTAGTGCCACAGATTTGCACCCACATGGTCTGAAAAGAGAGAGGATGTCGAAAATTCATGACAAGAGTTTCTCAAGGAGCAAGACCATTGGTCATAGTTTGGTTTCTCCGTATCCGTTTCTGAAACCAACAGGGGACAAGGAGACAAACAGTAACAAGGGTTTGCACATGTTTATGCCAACTTTACCAACTTCTGATCCTAATGTGAGACATGCTGCGAATAATAGAGTTGGATCTTACGAGTTTGAGACCATTGAATCTTCAAACGATGTTGAAAATGAAGGTGTCGAAGATCCTGTATTGAAGAATCAGATGAACAGCAACAGTGAAGGAGATTCAAACAGAAGGAAAGAAATGCCTCGTGCCAGTGTCATGATAAAGCTTATTCTCACCATGGTTTGGAGGAATCTCATAAGAAACCCTAATACCTATGCAAGTGTTTTGGGTCTTGTTTGGTCTCTTATATTTTTTAGGTGGAACATGAAGATGCCATCTATAATAAAAGGTTCCATAGACATAATATCTAATGCTGGGTTGGGAATGGCCATGTTCAGTTTAGGTCTGTTCATGGGATTACAACCGAAAATCATTACTTGTGGGAAAACCCGAGCTATGATTTCAATGTTAGTTAAGTTCTTGGTTGGTCCAATGGTGATTCTTGCAACCTCCAAAGCCATGGATATCAATGGAGTTCTTCTAANAGTTGCAGTGATCCAGGCTTCTCTTCCAGAGGGTATTGTTCCCTTTATATTTGCCAAAGAATATAATCTTCATGCAGACATACTCAGCACAGCGGTTATCTTTGGAATGGTGGTTGCTTTCCCAGTAACAATAGTATACTACGTGATTCTTGGACTCTAA 1578 0.4214 MIKGSDVYDVVAAIVPLYVALILAYGSVRWWKIFTPEQCSGINRFVXVFAVPXLCFXFISXXXPYTMXFRFLAADSLQKVVILVALVLWNAFTKWGSLDWTITLFSLSTLPNTLIMGXPXLKAMYGXFTGTLMIQIVVFQSVIWYTLLLFMFEYRAAKLLIMENFPDTAASISSFRVDSHVGSLGGREMLETNVETGEDGNVHVVVRSMSRSVSVASNLTGIRIYLEESSREPKLGRSNFSATDLHPHGLKRERMSKIHDKSFSRSKTIGHSLVSPYPFLKPTGDKETNSNKGLHMFMPTLPTSDPNVRHAANNRVGSYEFETIESSNDVENEGVEDPVLKNQMNSNSEGDSNRRKEMPRASVMIKLILTMVWRNLIRNPNTYASVLGLVWSLIFFRWNMKMPSIIKGSIDIISNAGLGMAMFSLGLFMGLQPKIITCGKTRAMISMLVKFLVGPMVILATSKAMDINGVLLXVAVIQASLPEGIVPFIFAKEYNLHADILSTAVIFGMVVAFPVTIVYYVILGL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0323 525 Pfam Membrane transport protein 10 520 IPR004776 GO:0016021|GO:0055085
Vra5g0323 525 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 525 IPR033526 GO:0010315|GO:0010329
Vra5g0323 525 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 525 - -
Vra5g0323 525 TIGRFAM 2a69: auxin efflux carrier 1 525 IPR014024 -
Vra5g0323 525 MobiDBLite consensus disorder prediction 280 311 - -
Vra5g0323 525 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0323 Vra-Chr5 3110569 3114414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0323 1 525 Organic Solute Cotransporters AT1G23080 46.504 4.71e-177 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0323 K13947 - gmx:100788935 617.846