Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0321 ATGATCAAAGGAAAAGACGTGTACGATGTTGTGGCAGCGCTTGTGCCTCTCTACGTGGCTTTGTTCTTAGCATATGGTTCCGTCCGTTGGTGGAAGATCTTCAGCCCAGAACAGTGCTCTGGCATAAACCGTTTTGTGTCTGTTTTTGCAGTGCCCTTCCTCTCTTTCCATTTCATATCCAACAATAACCCTTACACCATGAACTTCAGGTTCTTAGCTGCGGACTGTCTTCAAAAGGTTGTGATTTTGGCTGCACTTTTTCTGTGGAACACTTTCACAAAGTGGGGTAGCATTGACTGGACCATTACACTCTTCTCACTCTCCACTCTCCCCAACACACTCATCATGGGTGTTCCTCTTCTCAAAGCCATGTACGGAGATTTCACAGCCACCCTCATGATTCAAATTGTGGTTTTTCAGAGTGTGATTTGGTACACTCTCTTGCTGTTCATGTTTGAATACAGAGGGGCCAAGTTACTCATCTCAGAGCAATTCCCTGACACTGCTGGAGCCATTGCCTCCCTAAGGGTTGATTCAAGTGTGAGCTCTCTCAATGGAAGAGAGCCATTGCATGCTGATGCAGAAATTGGAGAAAACGGAGAACTCCACGTGGTGTTGAGAAGCATGTCACGCTCTACGTCCTTAAGCATGCCTTCTTCATTCCACAAGTCATATTCAACACCTAGACCATCAAATGCAGCTTTTGTGGATATGCCTCAGAACATGTTTTGGAGGAGCAAGAGTGACGGTTGCGGGGTTTCTAGAGCTGGTTTTGTTTACTCATACCCCTCACAAAATCTAGGGTTTGTAGGGTTTGATGGTGGTTTTGTTTCTTCACACATTTATCCAAAACCAGAGTTTCCAGGGTTTGTTAGTGGTTTGGCTACTCCATACCCGTCTCCAAAACCAGTGATTGCATGGTCGGATGGTGGTGGCCAAAGAAAAGCAGGTTCTAAAAATTGTTCATACATGTTTGGTTGCAGCTTGAATGCATCATCAAATTCTGATGTTAATCAGAGACATGAAATAAATAGAGTTGGCTCCTTTGCCACCATTGGACCTTCCAAATTTCCTCTTGAAACTGCTGCTTCAAAAGAACATGAACTTGTGAGTCAAGAAGTAGCAGAACATCGTGCAATGGGGAAACAAAAAGAGGTGAAAAATGAAGAAGTTGAGACAAACAAAAATCAACAAATGCCACGTGCTAATGTCATGATAAAACTTATTCTGATAATGGTTTGGAGGAATCTGATAAGAAACCCTAATACATATGCAAGTGTTTTAGGTCTCATTTGGTCTCTCATATTTTACAGGTGGAGCATCAAAGTGCCATCTATTATAAAAGGTTCCATTGAAATAATTTCTAACACAGGACTAGGAATGGCCATGTTCAGTCTTGGTCTATTCATGGCATTACAACCTAAGATCATTACTTGTGGAAAAACTCTGGCTGCACTTGCATTCGCAATTAAGTTCTTGGTTGGTCCATTTATGATTCTTGCAGCCTCCAAAATAATTGGTATCCATGGAGTTCTTTTACGAATTACAATTGTTCAGGCTGCTCTTCCCCAAGGAATTGTCCCATTTGTATTTGCAAAAGAATATAATCTTCATGCAGACGTGCTCAGCACAGCAGTTGTCTTCGGAATGGTGGTTGCGTTGCCCGTAACAATAATTTACTATGTAGTTCTTGGACTTTAG 1701 0.4221 MIKGKDVYDVVAALVPLYVALFLAYGSVRWWKIFSPEQCSGINRFVSVFAVPFLSFHFISNNNPYTMNFRFLAADCLQKVVILAALFLWNTFTKWGSIDWTITLFSLSTLPNTLIMGVPLLKAMYGDFTATLMIQIVVFQSVIWYTLLLFMFEYRGAKLLISEQFPDTAGAIASLRVDSSVSSLNGREPLHADAEIGENGELHVVLRSMSRSTSLSMPSSFHKSYSTPRPSNAAFVDMPQNMFWRSKSDGCGVSRAGFVYSYPSQNLGFVGFDGGFVSSHIYPKPEFPGFVSGLATPYPSPKPVIAWSDGGGQRKAGSKNCSYMFGCSLNASSNSDVNQRHEINRVGSFATIGPSKFPLETAASKEHELVSQEVAEHRAMGKQKEVKNEEVETNKNQQMPRANVMIKLILIMVWRNLIRNPNTYASVLGLIWSLIFYRWSIKVPSIIKGSIEIISNTGLGMAMFSLGLFMALQPKIITCGKTLAALAFAIKFLVGPFMILAASKIIGIHGVLLRITIVQAALPQGIVPFVFAKEYNLHADVLSTAVVFGMVVALPVTIIYYVVLGL* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0321 566 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 566 IPR033526 GO:0010315|GO:0010329
Vra5g0321 566 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 566 - -
Vra5g0321 566 Pfam Membrane transport protein 10 561 IPR004776 GO:0016021|GO:0055085
Vra5g0321 566 TIGRFAM 2a69: auxin efflux carrier 1 566 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0321 Vra-Chr5 3094199 3098329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0321 1 566 Organic Solute Cotransporters AT1G70940 45.455 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0321 K13947 - gmx:100788935 664.455