Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0317 ATGGCTGCATCGTATGCAAGACTTACTGTAGCAGCGTTGGTTCTGCTAGCTTTGACACCAATCTTTCCCCAATCTTCAGTTTCAGCTTCATCTGTGGGTAAATTCGTTGACGAAACCATCAATTCTCACAAGATCGTCATTTTCTCCAAGACCTATTGCCCGTACTGCAAGAGAGCTAAAGCTTTATTCAAAGAGTTGAAACAGGTTCCACATGTTGTTGAGCTTGATGAGAGAGAGGATGGTTCAAAGATTCAAGATGTCTTGATTAATATTGTTGGGAGGCGTACTGTGCCACAAGTTTTCGTTAATGGACAGCACCTTGGAGGCTCAGATGATACAGCTGCATCTTACGAGAGTGGACATCTGCATAAACTTCTAGGAATTAAGTCAGAGGGTCATGATGATCTGTGA 411 0.4282 MAASYARLTVAALVLLALTPIFPQSSVSASSVGKFVDETINSHKIVIFSKTYCPYCKRAKALFKELKQVPHVVELDEREDGSKIQDVLINIVGRRTVPQVFVNGQHLGGSDDTAASYESGHLHKLLGIKSEGHDDL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0317 136 Pfam Glutaredoxin 45 106 IPR002109 -
Vra5g0317 136 PRINTS Glutaredoxin signature 45 63 IPR014025 -
Vra5g0317 136 PRINTS Glutaredoxin signature 90 103 IPR014025 -
Vra5g0317 136 PRINTS Glutaredoxin signature 104 117 IPR014025 -
Vra5g0317 136 PANTHER BNAA02G04900D PROTEIN 11 120 - -
Vra5g0317 136 SUPERFAMILY Thioredoxin-like 34 127 IPR036249 -
Vra5g0317 136 ProSiteProfiles Glutaredoxin domain profile. 33 133 - -
Vra5g0317 136 Gene3D Glutaredoxin 23 127 - -
Vra5g0317 136 TIGRFAM GRX_euk: glutaredoxin 45 126 IPR011899 -
Vra5g0317 136 CDD GRX_GRXh_1_2_like 44 125 - -
Vra5g0317 136 ProSitePatterns Glutaredoxin active site. 47 62 IPR011767 -
Vra5g0317 136 PANTHER GLUTAREDOXIN 2 11 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0317 Vra-Chr5 3046433 3048527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0317 36 115 Miscellaneous Gene Families AT4G15700 35.000 1.19e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0317 K03676 - gmx:100777703 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0317 5 3046433 3048527 Vra5g0317 5 3046433 3048527 ECH