Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0309 ATGGAGACTCCTCCTCAGCAAGGTGTGGTGAAGAAGAAGGAGACAAGGGGTCGAAAACCTAAGCCAAAGGATGACAAGAAAGATGAACATTCCAAGACAAAGGAAGGGAGAAAAACGCAGCAATATCAGCAGCAACAGCAGCAGCAGCAACAACCTTCGGTCGATGAGAAATACACGCAATGGAAGTCTCTCGTCCCTGTCCTCTATGACTGGCTTGCTAACCACAACCTTGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAAGCCACTTACAAGAATCGCCAGCGGCTCTATCTTTCCGAACAGACTGATGGTAGCGTGCCAAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGAGTTGCGGCTGCAGAGCACATTTCGCAGTTTAATGAAGAGGCACGGTCCCCGTTTGTGAAGAAGTTCAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTACCACAAAATTCCAAGATTGTGGCAACACATACAGATAGCCCTGATGTCCTTGTTTGGGATGTTGAGAATCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGGCCTGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCTATGTGTCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGATAAAACGGTGGTATTGTGGAGTATTGAGGACCATATAACATCTGCTGCCACAGGTGGATCAATTATCAAGCCAAACTCTAAATCTGGAGAAGCCAATGATAAAACTGCTGAAAGCCCTTCTGTCGGGCCACGAGGTATCTACTGTGGGCATGAGGATACTGTTGAAGATGTGACTTTCTGTCCATCCAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGGTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGATTGGAATCCACATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTACGCATGTTTGATCGTCGCAATCTCACCACTAACGGAGTTGGGTCGCCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAGGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTGCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGATAAAGTAGTCGATTTTCACTGGAATGCATATGATCCATGGACAATTGTTAGCGTCTCTGATGACTGTGAAAGTACTGGTGGAGGAGGCACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGAAGAGGTTTTAGCGGAGCTGGAGAAATTCAAATCTCATGTGGTGGCATGCGCTTCCAAGTCTGAAAAATGA 1509 0.4553 METPPQQGVVKKKETRGRKPKPKDDKKDEHSKTKEGRKTQQYQQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATGGSIIKPNSKSGEANDKTAESPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISAPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKSEK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0309 502 PANTHER WD40 REPEAT FAMILY 31 499 - -
Vra5g0309 502 SUPERFAMILY WD40 repeat-like 143 496 IPR036322 GO:0005515
Vra5g0309 502 MobiDBLite consensus disorder prediction 249 275 - -
Vra5g0309 502 SMART WD40_4 423 470 IPR001680 GO:0005515
Vra5g0309 502 SMART WD40_4 198 238 IPR001680 GO:0005515
Vra5g0309 502 SMART WD40_4 365 405 IPR001680 GO:0005515
Vra5g0309 502 SMART WD40_4 144 183 IPR001680 GO:0005515
Vra5g0309 502 SMART WD40_4 316 356 IPR001680 GO:0005515
Vra5g0309 502 SMART WD40_4 271 311 IPR001680 GO:0005515
Vra5g0309 502 MobiDBLite consensus disorder prediction 7 37 - -
Vra5g0309 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 356 IPR001680 GO:0005515
Vra5g0309 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 407 IPR001680 GO:0005515
Vra5g0309 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 320 IPR001680 GO:0005515
Vra5g0309 502 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 56 122 IPR022052 -
Vra5g0309 502 MobiDBLite consensus disorder prediction 38 54 - -
Vra5g0309 502 MobiDBLite consensus disorder prediction 249 266 - -
Vra5g0309 502 Gene3D - 30 488 IPR015943 GO:0005515
Vra5g0309 502 MobiDBLite consensus disorder prediction 1 54 - -
Vra5g0309 502 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 31 499 - -
Vra5g0309 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Vra5g0309 502 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Vra5g0309 502 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Vra5g0309 502 Pfam WD domain, G-beta repeat 203 238 IPR001680 GO:0005515
Vra5g0309 502 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Vra5g0309 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0309 Vra-Chr5 2939878 2946342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0309 225 465 Miscellaneous Gene Families AT5G08390 24.597 2.99e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0309 K10752 - gmx:100779302 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0309 5 2939878 2946342 Vra5g0309 5 2939878 2946342 ECH