Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0300 ATGGTGGTGAGGATTCGGCTCTCGCGGTTCGGATGCAAGAACAAACCCTTCTATCGGGTCATGGCTGCTGATAGCAGATCTCCCAGAGACGGCAAACACATTGAAGTTCTCGGTTACTACAATCCCTTACCAGGTCAAGATGGTGGCAAGAGAATGGGTCTCAACTTCGAAAGGGTGAAGTATTGGCTTTCTGTTGGAGCTCAGCCTTCAGAGCCTGTGGAACGGCTTCTATTCAGAGCTGGGGTACTGCCCCCACCACCTATGGTGGCAATGGGACGTAAAGGTGGACTGCGTGATACTCGCCCTGTCGATGCTCTGACTGGGCGTGTGCTGAATCAAGAGAAGCTTGCTAATGAGAAGAACAATGACCATGAACATGAAGCTGCTGAAAACCCTTTTTAG 402 0.5075 MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHIEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVERLLFRAGVLPPPPMVAMGRKGGLRDTRPVDALTGRVLNQEKLANEKNNDHEHEAAENPF* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0300 133 PANTHER 30S RIBOSOMAL PROTEIN S16 1 118 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vra5g0300 133 MobiDBLite consensus disorder prediction 116 133 - -
Vra5g0300 133 PANTHER 30S RIBOSOMAL PROTEIN S16-LIKE 1 118 - -
Vra5g0300 133 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vra5g0300 133 MobiDBLite consensus disorder prediction 114 133 - -
Vra5g0300 133 TIGRFAM S16: ribosomal protein bS16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vra5g0300 133 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Vra5g0300 133 Gene3D - 1 132 IPR023803 -
Vra5g0300 133 SUPERFAMILY Ribosomal protein S16 3 95 IPR023803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0300 Vra-Chr5 2835725 2837084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0300 K02959 - gmx:100305630 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0300 5 2835725 2837084 Vra5g0300 5 2835725 2837084 ECH