Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0292 ATGGGTGATAGCAGTGTCCCATCTGGGTCTCCAAATGCAAAACCAGATCTTGTTCATGGAGACTCAGCGGTTTCCAACAACGCCTCGTTGGAAACCATTGTGCAAAGTTTCCAAGATTCAATGACTCTTGGTAAGAGGCATAAGTTCTGGGAAACACAACCTGTTGGACAGTACAAGGATGTTGGGGACGCAAGTTTGACTGAAGGCCCCATTGAGCCCCCCACACCTTTGTCTGAGGTTAAGCAGGAGCCTTATAACCTTCCTAGTGCTTATGAATGGACCACATGTGACATGGACTCTTCGGAAACCTGTGATGAGGTTTATGTTCTGCTGAAGAATAACTATGTTGAGGATGATGAAAACATGTTCAGGTTCAACTATTCCAAGGAGTTTCTCAGGTGGGCGTTGCGCGTTCCGGGGTATTACCGGAGTTGGCACATTGGTGTGCGTGCCAAGACCTCGAAGAAGTTGGTTGCTTTCATCAGTGGCGTACCAGCAAGGATCAGAGTTAATGAGGAGGTTGTGAAGATGGCTGAGATCAATTTCTTGTGTGTTCATAAGAAGCTCAGGTCGAAGAGGCTTGCGCCTGTTATGATCAAGGAGGTGACTAGGAGGGTTCATCTGGAAAATATTTGGCAGGCGGCTTATACAGCTGGGGTTGTGCTTCCAACACCAATCACGACTTGTCAGTATTGGCATCGATCATTGAATCCGAAGAAGCTGATTGATGTCGGGTTTTCAAGGCTTGGTGCTAGGATGACGATGAGTCGCACAATAAAACTTTATAAATTGCCAGATTCTCCTGTTACCCCTGGATTCAGGAAAATGGAGCTTCGGGATGTCCCGGCTGTTACTCGGCTACTTAGAAACTACTTGAGCCAGTTTGTTGTTGCACCTGATTTTGATGAAAATGATGTTGAGCACTGGCTACTTCCCAATGAGAATGTGGTGGATAGTTTCTTGGTGGAGAGTCCGGGGAATCATGAGATCACTGACTTCTGCAGCTTCTATACACTCCCCTCTTCGATCCTTGGAAATCAAAATTACTCAACTTTGAAAGCTGCTTATTCTTATTATAATGTCTCCACCAAAACCCCATTGACTCAGTTGATGAATGATGTGCTAATTGTAGCAAAGCAAAAGGATTTTGATGTTTTCAATGCCTTGGATGTGATGCACAATGAGAGTTTCCTCAAAGAGCTCAAGTTTGGACCGGGAGATGGACAGCTTCACTACTACTTGTACAATTATAGGATTCGTAATGCCTTGAAACCATCTGGACTCGGGCTTGTGCTTTTGTAG 1302 0.4516 MGDSSVPSGSPNAKPDLVHGDSAVSNNASLETIVQSFQDSMTLGKRHKFWETQPVGQYKDVGDASLTEGPIEPPTPLSEVKQEPYNLPSAYEWTTCDMDSSETCDEVYVLLKNNYVEDDENMFRFNYSKEFLRWALRVPGYYRSWHIGVRAKTSKKLVAFISGVPARIRVNEEVVKMAEINFLCVHKKLRSKRLAPVMIKEVTRRVHLENIWQAAYTAGVVLPTPITTCQYWHRSLNPKKLIDVGFSRLGARMTMSRTIKLYKLPDSPVTPGFRKMELRDVPAVTRLLRNYLSQFVVAPDFDENDVEHWLLPNENVVDSFLVESPGNHEITDFCSFYTLPSSILGNQNYSTLKAAYSYYNVSTKTPLTQLMNDVLIVAKQKDFDVFNALDVMHNESFLKELKFGPGDGQLHYYLYNYRIRNALKPSGLGLVLL* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0292 433 Pfam Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain 243 421 IPR022677 GO:0004379
Vra5g0292 433 Gene3D - 39 433 - -
Vra5g0292 433 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 231 433 IPR016181 -
Vra5g0292 433 PIRSF N-myristl_transf 8 433 IPR000903 GO:0004379|GO:0006499
Vra5g0292 433 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 45 230 IPR016181 -
Vra5g0292 433 Pfam Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain 70 229 IPR022676 GO:0004379
Vra5g0292 433 ProSitePatterns Myristoyl-CoA:protein N-myristoyltransferase signature 1. 179 187 IPR022678 GO:0004379
Vra5g0292 433 PANTHER N-MYRISTOYL TRANSFERASE 22 433 IPR000903 GO:0004379|GO:0006499
Vra5g0292 433 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g0292 433 PANTHER GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 22 433 - -
Vra5g0292 433 ProSitePatterns Myristoyl-CoA:protein N-myristoyltransferase signature 2. 402 408 IPR022678 GO:0004379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0292 Vra-Chr5 2773394 2775394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0292 1 433 Acyl Lipid Metabolism Gene Families AT5G57020 83.641 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0292 K00671 - gmx:100787291 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0292 5 2773394 2775394 Vra5g0292 5 2773394 2775394 ECH