Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0291 ATGGATTTGGAAGAGGAGCAGGAGTACGAGGAGCAAATGATGGAGGACGAAGAGGACGAGGACGAGATCACGCAGGAAGACGCTTGGGCCGTTATCTCGGCGTACTTCGAAGAGAAAGGCCTCGTTCGTCAGCAGCTCGATTCCTTCGACGAGTTCATCCAAAACACCATGCAGGAAATCGTCGATGAGTCTGCTGACATTGAAATTCGACCCGAGTCTCAGCACAATCCTGGTCACCAATCCGATTTCGCAGAGACTATTTATAAAATCAGTTTCGGTCAGATTTACTTGAGTAAGCCTATGATGACAGAGTCTGATGGAGAAACGGCCACCTTGTTTCCCAAGGCTGCTAGGTTAAGGAACCTCACGTATTCAGCTCCTCTGTATGTTGATGTCTCTAAGAGGGTTATAAAGAAGGGGCATGATGGTGAAGAGGTCACTGAGACTCAGGATTTCACCAAAGTTTTCATTGGCAAGGTTCCTATAATGCTTCGGTCTAGTTACTGCACATTATACCAGAATTCAGAGAAGGATTTGACTGAGCTTGGGGAATGCCCGTATGATCAAGGTGGGTATTTCATTATTAATGGGAGTGAGAAAGTTCTAATTGCTCAGGAGAAGATGAGCACCAACCATGTCTATGTCTTTAAGAAGAGGCAGCCAAACAAGTATGCCTATGTGGCTGAAGTTCGGTCCATGGCGGAGTCACAGAACAGACCACCCAGTACTATGTTTGTGCGCATGCTTTCTCGGACTAGTTCCAAAGGGGGTTCTTCAGGACAATATATACGTGCCACTCTTCCTTATATTCGAACTGAAATTCCCATCATTATTGTGTTTCGAGCATTGGGGTTTGTTGCTGATAAAGATATATTAGAGCATATATGCTATGACTTTTCGGACACTCAAATGATGGAGTTGCTACGTCCTTCTCTGGAAGAAGCGTTTGTAATTCAAAATCAACAGGTTGCACTTGACTACATTGGGAAAAGAGGAGCCACTGTTGGTGTAACCAAGGAAAAGAGAATTAAGTATGCTAAGGAGATCCTTCAAAAGGAGATGCTTCCTCATGTTGGCATTGGGGAATATTGTGAGACCAAGAAAGCTTACTATTTTGGATATATCATTCACCGGCTACTACTCTGTGCACTTGGGCGGAGAGCTGAGGATGATAGGGATCATTACGGAAACAAGAGGCTGGATCTGGCCGGTCCTTTACTTGGTGGCCTTTTTAGAATGCTATTCAGAAAGCTAACAAGAGATGTCAGGGCGTATGTACAGAAGTGTGTTGATAATGGGAAAGATGTTAATCTGCAATTTGCTATCAAAGCAAAAACCATCACAAGTGGCCTTAAATACTCACTTGCTACTGGTAATTGGGGGCAAGCAAATGCTGCAGGGACTAGAGCTGGAGTTTCACAGGTGCTGAACCGCTTAACCTATGCATCCACTTTATCGCACTTGCGAAGACTGAATTCCCCAATAGGGCGTGAAGGGAAGTTGGCCAAACCAAGACAATTGCATAATTCACAATGGGGAATGATGTGTCCAGCAGAAACACCCGAAGGACAAGCCTGTGGACTGGTGAAGAATCTGGCATTGATGGTCTACATAACAGTTGGTTCAGCTGCATATCCTATTCTAGAGTTTTTGGAAGAATGGGGCACAGAGAATTTTGAGGAAATTTCTCCTGCAGTGATTCCCCAAGCAACAAAAATTTTTGTAAACGGTTGCTGGATGGGTATCCATCGTGATCCTGATATGTTGGTGAGAACATTAAGAAAGCTGAGACGACGGGTTGATGTTAACACTGAAGTTGGGGTTGTCAGAGATATCCGTCTTAAAGAGTTGCGTATATATACAGACTATGGTCGTTGCAGTCGTCCTTTATTCATTGTGGATAAGCAAAGGCTTCTCATAAAGAAGAAGGATATTCATGCTTTACAACAAAGGGAATCCCCTGAAGAGGGTGGATGGCATGATCTAGTGTCCAAGGGCTATATAGAATATATTGACACGGAAGAAGAAGAGACTACAATGATTTCCATGACAATTAATGATCTTGTACAAGCTAGGATCAATCCAGAAGAAGCATATTCTGATACGTATACTCATTGTGAAATCCACCCATCACTGATTTTGGGTGTATGTGCGTCCATCATACCATTTCCTGATCACAATCAGTCCCCACGTAATACGTATCAGTCTGCAATGGGAAAGCAAGCAATGGGAATATATGTTACCAACTACCAGTTTCGGATGGACACCTTGGCCTATGTTTTATATTATCCACAAAAGCCATTGGTCACTACAAGAGCCATGGAGCATCTTCATTTCCGTCAACTCCCAGCTGGAATTAATGCCATCGTGGCCATTTCCTGTTATTCTGGTTACAATCAAGAAGATTCTGTGATCATGAACCAATCATCAATAGACCGTGGGTTCTTTCGGTCTTTGTTTTTCCGTTCATATAGGGATGAAGAAAAGAAGATGGGAACCCTAGTCAAAGAAGATTTTGGACGTCCAGATAGAGCTAACACCATGGGAATGAGACACGGTTCTTATGATAAGCTGGATGATGATGGTCTTGCACCACCAGGCACAAGAGTATCTGGAGAGGATGTTATTATTGGGAAGACCACCCCAATATCTCAAGAGGAGGCACAGGGACAAGCTTTACGATACACTAGGCGTGATCACAGCATAAGCTTACGTCACAGTGAAACTGGAATTGTTGATCAAGTTTTGCTGACAACAAATGCTGATGGATTGAGATTTGTGAAAGTCCGAGTGAGATCTGTTCGTATACCACAGATTGGTGACAAATTCAGTAGTAGACATGGTCAGAAGGGTACTGTTGGTATGACTTATACGCAAGAAGACATGCCCTGGACTGTGGAAGGCATCACCCCCGATATTATTGTCAATCCACATGCCATTCCTTCTCGAATGACAATTGGTCAGCTTATCGAGTGTATCATGGGGAAGGTGGCAGCTCACATGGGAAAAGAAGGAGATGCTACTCCTTTTACAGATGTTACTGTGGACAATATCAGCAAAGCTCTGCACAAATGTGGGTATCAAATGCGAGGTTTTGAGACTATGTACAATGGTCATACAGGTAGACGTCTCAGTGCAATGATTTTCCTTGGTCCTACATATTACCAAAGACTGAAGCACATGGTTGACGACAAGATCCATTCTCGTGGTCGGGGTCCTGTGCAGATCCTCACAAGGCAACCTGCTGAGGGACGGTCACGAGATGGAGGTCTCCGATTTGGAGAGATGGAACGAGATTGCATGATAGCTCATGGAGCTGCTCACTTCCTGAAGGAAAGGTTGTTTGATCAAAGTGATGCATATAGGGTTCATGTATGTGAGCAATGTGGGTTGATAGCTATTGCAAATCTCAAGAAGAATTCCTTTGAGTGCAGGGGGTGCAAAAACAAAACTGACATTGTTCAGGTTTTCATTCCGTATGCTTGTAAACTCCTCTTCCAAGAGTTAATGGCTATGGCTATAGCTCCAAGAATGCTTACAAAGGACGTCAAATCTAAAAAGAAGGACCAAAAGAAGAAGGGAGCCTGA 3588 0.4376 MDLEEEQEYEEQMMEDEEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEEGGWHDLVSKGYIEYIDTEEEETTMISMTINDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVFIPYACKLLFQELMAMAIAPRMLTKDVKSKKKDQKKKGA* 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0291 1195 Pfam RNA polymerase Rpb2, domain 2 210 401 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 Pfam RNA polymerase beta subunit 40 449 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 CDD RNA_pol_B_RPB2 41 1178 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vra5g0291 1195 Pfam RNA polymerase Rpb2, domain 6 717 1087 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 Gene3D - 748 936 IPR014724 GO:0003899
Vra5g0291 1195 Gene3D - 388 613 - -
Vra5g0291 1195 Gene3D - 718 1073 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 21 1182 - -
Vra5g0291 1195 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA 19 1186 - -
Vra5g0291 1195 Gene3D RNA polymerase alpha subunit dimerisation domain 1074 1182 - -
Vra5g0291 1195 Pfam RNA polymerase Rpb2, domain 5 659 710 IPR007647 GO:0006351
Vra5g0291 1195 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 19 1186 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vra5g0291 1195 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0291 1195 ProSitePatterns RNA polymerases beta chain signature. 940 952 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 Pfam RNA polymerase Rpb2, domain 7 1089 1180 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 Pfam RNA polymerase Rpb2, domain 3 474 538 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 Coils Coil 6 26 - -
Vra5g0291 1195 Gene3D RNA polymerase Rpb2, domain 2 211 387 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vra5g0291 1195 Pfam RNA polymerase Rpb2, domain 4 573 634 IPR007646 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0291 Vra-Chr5 2756881 2769051 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0291 K03010 - gmx:100790162 2298.47