Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0290 ATGGAGTGCGTTGCAGCGAGAAACTTGGCGGCAATGGCGTTTTGCGTGAGTCCTTCGTCGAGGTTGAGGTTGCGGAAGAAGATGTGGAGAAGAAGAACCGCGTCTGGCGGCCACGGCGTTCGGTGGCGCTCGCGGTTGCTGAAGGTGGAGGCCAAGGCAGGGAGCGAGAGTTGCGTGGCGACCAAAGAAGACTTCGCCGACGAGGACGATTACGTGAAGGCCGGAGGCTCCGAACTTGTTTTCGTACAAATGCAACGGAACAAAGCCATGGAAATGCAATCCAAGATCGTGGATAAGTTGCCCCCCATAGGAGATGATATACTAGATCTAGTTGTGATTGGTTGTGGTCCGGCTGGTCTTGCTCTGGCTGCTGAATCAGCCAAGTTGGGACTAAAAGTTGGGCTTATTGGCCCGGATCTTCCTTTTACAAATAATTATGGTGTGTGGGAGGACGAATTTAGAGGTCTCGGACTTGAAGGTTGCATTGAACATGTTTGGAAGGACACCGTTGTCTATCTCGACAATGAGGATCCCGTTTTCATTGGACGTTCCTATGGACGTGTCAGTCGGCATCTGCTACATGAGGAATTGTTAAGCAGGTGTGTCGAGTCAGGTGTCACATATCTTAGCTCAAGAGTAGAAAATATTATTGAGGCGAGCAATGGTCACAGTCATGTCGTCTGTGAATATGATACTGTAGTGCGCAGCAGGCTTGTTACTGTTGCATCAGGAGCTGCTTCGGGGAAACTGTTGCAATATGAGGTCGGGGGTCCAAAGGTTTCTGTTCAAACAGCTTATGGTGTGGAAGTTGAGGTGGAAAACAATCCTTATGATCCAAATGTGATGGTTTTCATGGATTACAGAGACTACATGAAGCAAAATGTTCAAGGTCTAGAAGCAAATTATCCAACATTTCTATATGCAATGCCCATGTCCAGTACAAGAGTGTTTTTTGAGGAAACCTGTTTAGCGTCAAAAGATGCGATGCCTTTTGATTTACTAAAGAAGAAGCTCTTTTCGAGATTAAATTCAATGGGGATCAGAATCACTAAAACTTACGAAGAGGAATGGTCTTATATCCCTGTTGGCGGATCCTTACCAAACACAGAACAAAAGAACCTTGCATTTGGTGCAGCTGCCAGCATGGTGCATCCAGCCACAGGGTACTCCGTTGTGAGATCTTTGTCAGAAGCTCCAAAATATGCTTCAGTAATTTCTAATATTTTGAAAGATGTTCATGCCAAGGACACTATTACCCAAGAAAGAAGAAAGGAGAATTTGTCTATGCAAGCTTGGAATACACTTTGGCCACAAGAAAGGAAGCGGCAGAGGGCATTCTTTCTTTTTGGATTAGCTCTAATTGTGCAGCTGGACATTGGGGGAATTCGAACATTCTTTCGTACTTTCTTCTGCCTACCTGATTGGATGTGGCAGGGATTTCTTGGCTCCTCTCTCTCTTCTACAGATCTTTTATTATTTGCTTTCTACATGTTCATAATAGCACCAAATAACTTGAGAATGAGTCTAGTGAGACATCTGCTTTCAGATCCTACCGGTGCAACCATGATAAAGACTTACTTAGCGGTATAG 1590 0.4522 MECVAARNLAAMAFCVSPSSRLRLRKKMWRRRTASGGHGVRWRSRLLKVEAKAGSESCVATKEDFADEDDYVKAGGSELVFVQMQRNKAMEMQSKIVDKLPPIGDDILDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFRGLGLEGCIEHVWKDTVVYLDNEDPVFIGRSYGRVSRHLLHEELLSRCVESGVTYLSSRVENIIEASNGHSHVVCEYDTVVRSRLVTVASGAASGKLLQYEVGGPKVSVQTAYGVEVEVENNPYDPNVMVFMDYRDYMKQNVQGLEANYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKKLFSRLNSMGIRITKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVISNILKDVHAKDTITQERRKENLSMQAWNTLWPQERKRQRAFFLFGLALIVQLDIGGIRTFFRTFFCLPDWMWQGFLGSSLSSTDLLLFAFYMFIIAPNNLRMSLVRHLLSDPTGATMIKTYLAV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0290 529 Pfam Lycopene cyclase protein 109 506 - -
Vra5g0290 529 PRINTS Pyridine nucleotide disulphide reductase class-I signature 109 131 - -
Vra5g0290 529 PRINTS Pyridine nucleotide disulphide reductase class-I signature 239 248 - -
Vra5g0290 529 PANTHER LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC ISOFORM X1 8 488 - -
Vra5g0290 529 SUPERFAMILY FAD/NAD(P)-binding domain 107 502 IPR036188 -
Vra5g0290 529 Gene3D - 108 450 IPR036188 -
Vra5g0290 529 TIGRFAM carotene-cycl: lycopene cyclase family protein 109 509 IPR010108 GO:0016117|GO:0016705
Vra5g0290 529 PANTHER - 8 488 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0290 K06444 - gmx:100790686 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0290 5 2727042 2736157 Vra5g0290 5 2727042 2736157 ECH