Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0284 ATGGGGGAAGAGGTGCGTGTAACCAATTTGCATAATAGAAACGGTGGAAACGAAGATCAGAACCAGGAATTCGACATTTATCCTTTGAGTAGTTACTATTTTGGATCCAAAGATGCCATTCCCTTCAAAGACCACACTCTACATCATCACCTTCTCAGGATCCAATCCAACTATGCTGCCAGTGGATTACGAACTTCTGTGGAGGCTGTCTTACTGGTTGAATTGTTCAAACATCCACACTTGTTGCTTTTGCAAGTAAGAAATTCCATCTATAAACTTCCCGGTGGTAGATTAAGGCCAGGCGAATCAGATACTGATGGATTGAAGCGTAAGCTGACAAGGAAGCTTTCTGTTGATGAAGATGGAGATGGTTCAGAATGGGAGGTTGGTGAATGCCTTGGAATGTGGTGGAGACCTGATTTTGAAACATTATTGTATCCTTTCTTGCCACCAAATGTAAAACAGCCAAAGGAGTGTACAAAAGTGTTCCTTGTGAAGTTGCCTGCCAGCAGGAAGTTCATTGTACCCAAGAACATGAGGTTGCTTGCAGTTCCATTGTGCCAAGTTCATGAAAATCAAAAGACATATGGGCAGATAATATCAGGTGTTCCACAGCTTCTGTCGAAATTCTCTTTCAACATGTTGGAATCTTGA 654 0.4205 MGEEVRVTNLHNRNGGNEDQNQEFDIYPLSSYYFGSKDAIPFKDHTLHHHLLRIQSNYAASGLRTSVEAVLLVELFKHPHLLLLQVRNSIYKLPGGRLRPGESDTDGLKRKLTRKLSVDEDGDGSEWEVGECLGMWWRPDFETLLYPFLPPNVKQPKECTKVFLVKLPASRKFIVPKNMRLLAVPLCQVHENQKTYGQIISGVPQLLSKFSFNMLES* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0284 217 ProSiteProfiles Nudix hydrolase domain profile. 62 188 IPR000086 -
Vra5g0284 217 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 1 6 216 - -
Vra5g0284 217 Pfam Nucleotide hydrolase 23 210 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vra5g0284 217 SUPERFAMILY Nudix 70 140 IPR015797 -
Vra5g0284 217 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 6 216 IPR016706 GO:0003729|GO:0005849|GO:0006378
Vra5g0284 217 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 22 214 - -
Vra5g0284 217 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g0284 217 PIRSF CPSF-25 2 217 IPR016706 GO:0003729|GO:0005849|GO:0006378
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0284 Vra-Chr5 2673130 2675264 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0284 K14397 - gmx:100791216 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0284 5 2673130 2675264 Vra5g0284 5 2673130 2675264 ECH